Analysis of interatomic Contacts of Structural Units in PDB entry:
8YIH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YIH entry

There are 3 chains in PDB entry 8YIH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 344ILE 359
A
 GLU 2ALA 1722
C
 G 1 G 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8YIH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
98 108Right-handed alpha
Helix 6
AA6
A
116 125Right-handed alpha
Helix 7
AA7
A
129 131Right-handed 310
Helix 8
AA8
A
141 144Right-handed 310
Helix 9
AA9
A
148 160Right-handed alpha
Helix 10
AB1
A
183 195Right-handed alpha
Helix 11
AB2
A
204 213Right-handed alpha
Helix 12
AB3
A
232 252Right-handed alpha
Helix 13
AB4
A
271 292Right-handed alpha
Helix 14
AB5
A
293 314Right-handed alpha
Helix 15
AB6
A
316 343Right-handed alpha
Helix 16
AB7
A
350 362Right-handed alpha
Helix 17
AB8
A
364 379Right-handed alpha
Helix 18
AB9
A
394 412Right-handed alpha
Helix 19
AC1
A
445 452Right-handed alpha
Helix 20
AC2
A
462 465Right-handed 310
Helix 21
AC3
A
484 495Right-handed alpha
Helix 22
AC4
A
510 534Right-handed alpha
Helix 23
AC5
A
543 550Right-handed alpha
Helix 24
AC6
A
561 563Right-handed 310
Helix 25
AC7
A
567 569Right-handed 310
Helix 26
AC8
A
570 582Right-handed alpha
Helix 27
AC9
A
598 606Right-handed alpha
Helix 28
AD1
A
607 612Right-handed 310
Helix 29
AD2
A
637 656Right-handed alpha
Helix 30
AD3
A
667 680Right-handed alpha
Helix 31
AD4
A
681 687Right-handed 310
Helix 32
AD5
A
692 697Right-handed 310
Helix 33
AD6
A
741 748Right-handed alpha
Helix 34
AD7
A
792 810Right-handed alpha
Helix 35
AD8
A
845 852Right-handed alpha
Helix 36
AD9
A
862 869Right-handed alpha
Helix 37
AE1
A
873 878Right-handed alpha
Helix 38
AE2
A
916 930Right-handed alpha
Helix 39
AE3
A
960 965Right-handed alpha
Helix 40
AE4
A
972 976Right-handed 310
Helix 41
AE5
A
982 990Right-handed alpha
Helix 42
AE6
A
991 1016Right-handed alpha
Helix 43
AE7
A
1020 1024Right-handed 310
Helix 44
AE8
A
1174 1182Right-handed alpha
Helix 45
AE9
A
1183 1186Right-handed 310
Helix 46
AF1
A
1190 1199Right-handed alpha
Helix 47
AF2
A
1209 1232Right-handed alpha
Helix 48
AF3
A
1236 1248Right-handed alpha
Helix 49
AF4
A
1249 1259Right-handed alpha
Helix 50
AF5
A
1260 1261Right-handed 310
Helix 51
AF6
A
1262 1266Right-handed 310
Helix 52
AF7
A
1272 1277Right-handed alpha
Helix 53
AF8
A
1285 1293Right-handed alpha
Helix 54
AF9
A
1295 1300Right-handed alpha
Helix 55
AG1
A
1303 1310Right-handed alpha
Helix 56
AG2
A
1313 1319Right-handed alpha
Helix 57
AG3
A
1324 1337Right-handed alpha
Helix 58
AG4
A
1338 1341Right-handed 310
Helix 59
AG5
A
1348 1353Right-handed alpha
Helix 60
AG6
A
1354 1356Right-handed 310
Helix 61
AG7
A
1362 1382Right-handed alpha
Helix 62
AG8
A
1382 1393Right-handed alpha
Helix 63
AG9
A
1408 1412Right-handed 310
Helix 64
AH1
A
1416 1420Right-handed 310
Helix 65
AH2
A
1425 1430Right-handed alpha
Helix 66
AH3
A
1432 1441Right-handed alpha
Helix 67
AH4
A
1446 1455Right-handed alpha
Helix 68
AH5
A
1468 1491Right-handed alpha
Helix 69
AH6
A
1495 1507Right-handed alpha
Helix 70
AH7
A
1508 1519Right-handed alpha
Helix 71
AH8
A
1520 1525Right-handed 310
Helix 72
AH9
A
1529 1546Right-handed alpha
Helix 73
AI1
A
1609 1628Right-handed alpha
Helix 74
AI2
A
1629 1651Right-handed alpha
Helix 75
AI3
A
1657 1662Right-handed alpha
Helix 76
AI4
A
1701 1722Right-handed alpha
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There are 11 sheets in PDB entry 8YIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
167 172parallel
Strand 3
A
133 139parallel
Strand 4
A
59 64parallel
Strand 5
A
111 115parallel
Strand 6
A
85 87parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 225first strand
Strand 2
A
501 507parallel
Strand 3
A
475 478parallel
Strand 4
A
388 391parallel
Strand 5
A
457 460parallel
Strand 6
A
421 424parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
565 566anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 596first strand
Strand 2
A
616 618anti-parallel
Strand 3
A
630 631anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 706first strand
Strand 2
A
1358 1360anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 771first strand
Strand 2
A
776 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
786 789anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 771first strand
Strand 2
A
776 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
754 758anti-parallel
Strand 5
A
830 836anti-parallel
Strand 6
A
842 844anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 820first strand
Strand 2
A
1282 1283anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
969 971first strand
Strand 2
A
939 943anti-parallel
Strand 3
A
892 899anti-parallel
Strand 4
A
881 883anti-parallel
Strand 5
A
977 979anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1669 1670first strand
Strand 2
A
1684 1685anti-parallel
Strand 3
A
1694 1695anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1674 1676first strand
Strand 2
A
1679 1681anti-parallel
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