Analysis of interatomic Contacts of Structural Units in PDB entry:
8YII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YII entry

There are 3 chains in PDB entry 8YII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 1719
B
 ILE 344ILE 359
C
 G 1 U 104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 8YII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
46 49Right-handed 310
Helix 4
AA4
A
66 81Right-handed alpha
Helix 5
AA5
A
89 97Right-handed 310
Helix 6
AA6
A
98 109Right-handed alpha
Helix 7
AA7
A
116 125Right-handed alpha
Helix 8
AA8
A
129 131Right-handed 310
Helix 9
AA9
A
141 144Right-handed 310
Helix 10
AB1
A
148 160Right-handed alpha
Helix 11
AB2
A
183 195Right-handed alpha
Helix 12
AB3
A
206 213Right-handed alpha
Helix 13
AB4
A
232 252Right-handed alpha
Helix 14
AB5
A
271 292Right-handed alpha
Helix 15
AB6
A
292 313Right-handed alpha
Helix 16
AB7
A
316 346Right-handed alpha
Helix 17
AB8
A
350 363Right-handed alpha
Helix 18
AB9
A
364 379Right-handed alpha
Helix 19
AC1
A
394 411Right-handed alpha
Helix 20
AC2
A
445 452Right-handed alpha
Helix 21
AC3
A
462 466Right-handed 310
Helix 22
AC4
A
484 495Right-handed alpha
Helix 23
AC5
A
510 535Right-handed alpha
Helix 24
AC6
A
543 552Right-handed alpha
Helix 25
AC7
A
561 563Right-handed 310
Helix 26
AC8
A
567 569Right-handed 310
Helix 27
AC9
A
570 582Right-handed alpha
Helix 28
AD1
A
598 606Right-handed alpha
Helix 29
AD2
A
607 612Right-handed 310
Helix 30
AD3
A
637 656Right-handed alpha
Helix 31
AD4
A
672 677Right-handed alpha
Helix 32
AD5
A
680 687Right-handed 310
Helix 33
AD6
A
741 749Right-handed alpha
Helix 34
AD7
A
792 810Right-handed alpha
Helix 35
AD8
A
845 852Right-handed alpha
Helix 36
AD9
A
862 869Right-handed alpha
Helix 37
AE1
A
873 877Right-handed 310
Helix 38
AE2
A
916 926Right-handed alpha
Helix 39
AE3
A
954 958Right-handed 310
Helix 40
AE4
A
960 964Right-handed 310
Helix 41
AE5
A
972 974Right-handed 310
Helix 42
AE6
A
983 991Right-handed alpha
Helix 43
AE7
A
991 1016Right-handed alpha
Helix 44
AE8
A
1020 1024Right-handed 310
Helix 45
AE9
A
1174 1182Right-handed alpha
Helix 46
AF1
A
1190 1199Right-handed alpha
Helix 47
AF2
A
1200 1204Right-handed 310
Helix 48
AF3
A
1209 1232Right-handed alpha
Helix 49
AF4
A
1236 1248Right-handed alpha
Helix 50
AF5
A
1249 1260Right-handed alpha
Helix 51
AF6
A
1261 1266Right-handed 310
Helix 52
AF7
A
1272 1277Right-handed alpha
Helix 53
AF8
A
1285 1295Right-handed alpha
Helix 54
AF9
A
1303 1309Right-handed alpha
Helix 55
AG1
A
1313 1319Right-handed alpha
Helix 56
AG2
A
1324 1339Right-handed alpha
Helix 57
AG3
A
1363 1382Right-handed alpha
Helix 58
AG4
A
1383 1393Right-handed alpha
Helix 59
AG5
A
1422 1430Right-handed alpha
Helix 60
AG6
A
1432 1441Right-handed alpha
Helix 61
AG7
A
1446 1455Right-handed alpha
Helix 62
AG8
A
1461 1466Right-handed alpha
Helix 63
AG9
A
1467 1491Right-handed alpha
Helix 64
AH1
A
1495 1507Right-handed alpha
Helix 65
AH2
A
1508 1519Right-handed alpha
Helix 66
AH3
A
1520 1525Right-handed 310
Helix 67
AH4
A
1529 1547Right-handed alpha
Helix 68
AH5
A
1610 1628Right-handed alpha
Helix 69
AH6
A
1629 1651Right-handed alpha
Helix 70
AH7
A
1655 1663Right-handed alpha
Helix 71
AH8
A
1701 1719Right-handed alpha
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There are 11 sheets in PDB entry 8YII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
167 172parallel
Strand 3
A
133 139parallel
Strand 4
A
59 64parallel
Strand 5
A
111 115parallel
Strand 6
A
85 88parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
457 460parallel
Strand 3
A
388 391parallel
Strand 4
A
475 478parallel
Strand 5
A
501 507parallel
Strand 6
A
219 225parallel
Strand 7
B
357 358anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
268 269anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
565 566anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 596first strand
Strand 2
A
616 619anti-parallel
Strand 3
A
630 631anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
702 706first strand
Strand 2
A
1358 1362anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 772first strand
Strand 2
A
775 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
786 789anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 772first strand
Strand 2
A
775 781anti-parallel
Strand 3
A
723 733anti-parallel
Strand 4
A
754 758anti-parallel
Strand 5
A
830 838anti-parallel
Strand 6
A
841 844anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
819 820first strand
Strand 2
A
1282 1283anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
970 971first strand
Strand 2
A
939 944anti-parallel
Strand 3
A
893 899anti-parallel
Strand 4
A
880 884anti-parallel
Strand 5
A
976 982anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1680 1688first strand
Strand 2
A
1691 1699anti-parallel
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