Analysis of interatomic Contacts of Structural Units in PDB entry:
8YIL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YIL entry

There are 20 chains in PDB entry 8YIL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	TRP 457
C	MET 1	LYS 385
B	LEU 17	LEU 368
D	MET 62	LYS 309
E	LYS 31	GLY 215
N	MET 1	LYS 385
F	VAL 74	LYS 147
G	PRO 2	LYS 127
H	GLY 2	VAL 94
I	SER 5	ALA 58
L	ALA 27	TRP 457
O	MET 62	LYS 309
M	LEU 17	LEU 368
S	GLY 2	VAL 94
P	LYS 31	GLY 215
Q	GLU 73	LYS 147
R	PRO 2	LYS 127
T	SER 4	ALA 57
U	LYS 10	ASP 53
V	THR 11	LEU 61

There are178 helices in PDB entry 8YIL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	78	Right-handed alpha
Helix 2	AA2	A	79	88	Right-handed alpha
Helix 3	AA3	A	112	122	Right-handed alpha
Helix 4	AA4	A	134	155	Right-handed alpha
Helix 5	AA5	A	155	169	Right-handed alpha
Helix 6	AA6	A	172	176	Right-handed 310
Helix 7	AA7	A	190	201	Right-handed alpha
Helix 8	AA8	A	215	224	Right-handed alpha
Helix 9	AA9	A	274	286	Right-handed alpha
Helix 10	AB1	A	293	298	Right-handed 310
Helix 11	AB2	A	302	310	Right-handed alpha
Helix 12	AB3	A	339	352	Right-handed alpha
Helix 13	AB4	A	352	357	Right-handed alpha
Helix 14	AB5	A	359	379	Right-handed alpha
Helix 15	AB6	A	384	396	Right-handed alpha
Helix 16	AB7	A	402	411	Right-handed alpha
Helix 17	AB8	A	414	426	Right-handed alpha
Helix 18	AB9	A	444	450	Right-handed alpha
Helix 19	AC1	A	451	453	Right-handed 310
Helix 20	AC2	C	2	7	Right-handed alpha
Helix 21	AC3	C	9	18	Right-handed alpha
Helix 22	AC4	C	27	30	Right-handed 310
Helix 23	AC5	C	31	51	Right-handed alpha
Helix 24	AC6	C	60	71	Right-handed alpha
Helix 25	AC7	C	74	103	Right-handed alpha
Helix 26	AC8	C	110	133	Right-handed alpha
Helix 27	AC9	C	137	149	Right-handed alpha
Helix 28	AD1	C	150	154	Right-handed 310
Helix 29	AD2	C	161	167	Right-handed alpha
Helix 30	AD3	C	172	203	Right-handed alpha
Helix 31	AD4	C	225	247	Right-handed alpha
Helix 32	AD5	C	253	258	Right-handed 310
Helix 33	AD6	C	275	283	Right-handed alpha
Helix 34	AD7	C	288	301	Right-handed alpha
Helix 35	AD8	C	304	309	Right-handed alpha
Helix 36	AD9	C	319	340	Right-handed alpha
Helix 37	AE1	C	347	365	Right-handed alpha
Helix 38	AE2	C	365	381	Right-handed alpha
Helix 39	AE3	B	38	42	Right-handed 310
Helix 40	AE4	B	46	53	Right-handed alpha
Helix 41	AE5	B	63	73	Right-handed alpha
Helix 42	AE6	B	97	112	Right-handed alpha
Helix 43	AE7	B	115	122	Right-handed alpha
Helix 44	AE8	B	122	135	Right-handed alpha
Helix 45	AE9	B	137	151	Right-handed alpha
Helix 46	AF1	B	168	180	Right-handed alpha
Helix 47	AF2	B	181	183	Right-handed 310
Helix 48	AF3	B	193	203	Right-handed alpha
Helix 49	AF4	B	204	208	Right-handed 310
Helix 50	AF5	B	251	260	Right-handed alpha
Helix 51	AF6	B	293	309	Right-handed alpha
Helix 52	AF7	B	315	317	Right-handed 310
Helix 53	AF8	B	318	329	Right-handed alpha
Helix 54	AF9	B	339	343	Right-handed 310
Helix 55	AG1	B	358	362	Right-handed 310
Helix 56	AG2	B	364	368	Right-handed 310
Helix 57	AG3	D	63	68	Right-handed alpha
Helix 58	AG4	D	86	100	Right-handed alpha
Helix 59	AG5	D	112	116	Right-handed 310
Helix 60	AG6	D	121	130	Right-handed alpha
Helix 61	AG7	D	161	168	Right-handed alpha
Helix 62	AG8	D	187	196	Right-handed alpha
Helix 63	AG9	D	243	260	Right-handed alpha
Helix 64	AH1	D	262	292	Right-handed alpha
Helix 65	AH2	D	292	297	Right-handed alpha
Helix 66	AH3	E	48	80	Right-handed alpha
Helix 67	AH4	E	81	83	Right-handed 310
Helix 68	AH5	E	88	92	Right-handed 310
Helix 69	AH6	E	125	130	Right-handed alpha
Helix 70	AH7	N	2	7	Right-handed alpha
Helix 71	AH8	N	9	18	Right-handed alpha
Helix 72	AH9	N	27	30	Right-handed 310
Helix 73	AI1	N	31	51	Right-handed alpha
Helix 74	AI2	N	60	71	Right-handed alpha
Helix 75	AI3	N	74	103	Right-handed alpha
Helix 76	AI4	N	110	133	Right-handed alpha
Helix 77	AI5	N	137	149	Right-handed alpha
Helix 78	AI6	N	150	154	Right-handed 310
Helix 79	AI7	N	160	167	Right-handed alpha
Helix 80	AI8	N	172	203	Right-handed alpha
Helix 81	AI9	N	225	247	Right-handed alpha
Helix 82	AJ1	N	253	258	Right-handed 310
Helix 83	AJ2	N	275	283	Right-handed alpha
Helix 84	AJ3	N	288	301	Right-handed alpha
Helix 85	AJ4	N	304	309	Right-handed alpha
Helix 86	AJ5	N	319	340	Right-handed alpha
Helix 87	AJ6	N	347	365	Right-handed alpha
Helix 88	AJ7	N	365	381	Right-handed alpha
Helix 89	AJ8	F	76	85	Right-handed alpha
Helix 90	AJ9	F	88	106	Right-handed alpha
Helix 91	AK1	F	123	139	Right-handed alpha
Helix 92	AK2	F	140	142	Right-handed 310
Helix 93	AK3	G	4	17	Right-handed alpha
Helix 94	AK4	G	20	35	Right-handed alpha
Helix 95	AK5	G	38	42	Right-handed 310
Helix 96	AK6	G	53	62	Right-handed alpha
Helix 97	AK7	G	64	84	Right-handed alpha
Helix 98	AK8	G	89	93	Right-handed 310
Helix 99	AK9	G	103	119	Right-handed alpha
Helix 100	AL1	H	31	34	Right-handed 310
Helix 101	AL2	H	47	55	Right-handed alpha
Helix 102	AL3	H	56	81	Right-handed alpha
Helix 103	AL4	I	17	22	Right-handed alpha
Helix 104	AL5	I	23	44	Right-handed alpha
Helix 105	AL6	I	48	54	Right-handed alpha
Helix 106	AL7	L	70	78	Right-handed alpha
Helix 107	AL8	L	79	88	Right-handed alpha
Helix 108	AL9	L	112	122	Right-handed alpha
Helix 109	AM1	L	134	155	Right-handed alpha
Helix 110	AM2	L	155	169	Right-handed alpha
Helix 111	AM3	L	172	176	Right-handed 310
Helix 112	AM4	L	190	201	Right-handed alpha
Helix 113	AM5	L	215	224	Right-handed alpha
Helix 114	AM6	L	274	286	Right-handed alpha
Helix 115	AM7	L	293	298	Right-handed 310
Helix 116	AM8	L	302	310	Right-handed alpha
Helix 117	AM9	L	339	352	Right-handed alpha
Helix 118	AN1	L	352	357	Right-handed alpha
Helix 119	AN2	L	359	379	Right-handed alpha
Helix 120	AN3	L	384	396	Right-handed alpha
Helix 121	AN4	L	402	411	Right-handed alpha
Helix 122	AN5	L	414	426	Right-handed alpha
Helix 123	AN6	L	444	450	Right-handed alpha
Helix 124	AN7	L	451	453	Right-handed 310
Helix 125	AN8	O	63	68	Right-handed alpha
Helix 126	AN9	O	86	100	Right-handed alpha
Helix 127	AO1	O	112	116	Right-handed 310
Helix 128	AO2	O	121	130	Right-handed alpha
Helix 129	AO3	O	161	168	Right-handed alpha
Helix 130	AO4	O	187	196	Right-handed alpha
Helix 131	AO5	O	243	260	Right-handed alpha
Helix 132	AO6	O	262	292	Right-handed alpha
Helix 133	AO7	O	292	297	Right-handed alpha
Helix 134	AO8	M	38	42	Right-handed 310
Helix 135	AO9	M	46	53	Right-handed alpha
Helix 136	AP1	M	63	73	Right-handed alpha
Helix 137	AP2	M	97	112	Right-handed alpha
Helix 138	AP3	M	115	122	Right-handed alpha
Helix 139	AP4	M	122	135	Right-handed alpha
Helix 140	AP5	M	137	151	Right-handed alpha
Helix 141	AP6	M	168	180	Right-handed alpha
Helix 142	AP7	M	181	183	Right-handed 310
Helix 143	AP8	M	193	203	Right-handed alpha
Helix 144	AP9	M	204	208	Right-handed 310
Helix 145	AQ1	M	251	260	Right-handed alpha
Helix 146	AQ2	M	293	309	Right-handed alpha
Helix 147	AQ3	M	315	317	Right-handed 310
Helix 148	AQ4	M	318	329	Right-handed alpha
Helix 149	AQ5	M	339	343	Right-handed 310
Helix 150	AQ6	M	358	362	Right-handed 310
Helix 151	AQ7	M	364	368	Right-handed 310
Helix 152	AQ8	S	31	34	Right-handed 310
Helix 153	AQ9	S	46	55	Right-handed alpha
Helix 154	AR1	S	56	81	Right-handed alpha
Helix 155	AR2	P	48	80	Right-handed alpha
Helix 156	AR3	P	81	83	Right-handed 310
Helix 157	AR4	P	88	92	Right-handed 310
Helix 158	AR5	P	125	130	Right-handed alpha
Helix 159	AR6	Q	76	85	Right-handed alpha
Helix 160	AR7	Q	88	106	Right-handed alpha
Helix 161	AR8	Q	123	139	Right-handed alpha
Helix 162	AR9	Q	140	142	Right-handed 310
Helix 163	AS1	R	4	17	Right-handed alpha
Helix 164	AS2	R	20	35	Right-handed alpha
Helix 165	AS3	R	38	42	Right-handed 310
Helix 166	AS4	R	53	62	Right-handed alpha
Helix 167	AS5	R	64	84	Right-handed alpha
Helix 168	AS6	R	89	93	Right-handed 310
Helix 169	AS7	R	103	119	Right-handed alpha
Helix 170	AS8	T	6	11	Right-handed alpha
Helix 171	AS9	T	13	22	Right-handed alpha
Helix 172	AT1	T	23	44	Right-handed alpha
Helix 173	AT2	T	48	54	Right-handed alpha
Helix 174	AT3	U	19	24	Right-handed alpha
Helix 175	AT4	U	28	32	Right-handed 310
Helix 176	AT5	U	34	45	Right-handed alpha
Helix 177	AT6	V	26	31	Right-handed alpha
Helix 178	AT7	V	31	39	Right-handed alpha

There are 20 sheets in PDB entry 8YIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	206	212	parallel
Strand 4	A	49	55	anti-parallel
Strand 5	A	102	108	anti-parallel
Strand 6	A	92	97	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	314	321	anti-parallel
Strand 3	A	326	334	anti-parallel
Strand 4	A	259	266	anti-parallel
Strand 5	A	432	437	anti-parallel
Strand 6	A	247	253	parallel
Strand 7	H	22	29	anti-parallel
Strand 8	D	299	302	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	218	219	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	185	190	parallel
Strand 3	B	28	35	anti-parallel
Strand 4	B	87	94	anti-parallel
Strand 5	B	76	82	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	232	first strand
Strand 2	B	352	357	parallel
Strand 3	B	237	245	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	273	279	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	313	first strand
Strand 2	B	345	346	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	146	148	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	214	first strand
Strand 2	D	222	223	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	211	214	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	120	first strand
Strand 2	E	152	156	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	23	first strand
Strand 2	N	218	219	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	31	first strand
Strand 2	L	38	42	anti-parallel
Strand 3	L	206	212	parallel
Strand 4	L	49	55	anti-parallel
Strand 5	L	102	108	anti-parallel
Strand 6	L	92	97	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	287	289	first strand
Strand 2	L	314	321	anti-parallel
Strand 3	L	326	334	anti-parallel
Strand 4	L	259	266	anti-parallel
Strand 5	L	432	437	anti-parallel
Strand 6	L	247	253	parallel
Strand 7	S	22	29	anti-parallel
Strand 8	O	299	302	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	133	135	first strand
Strand 2	O	146	148	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	213	214	first strand
Strand 2	O	222	223	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	22	first strand
Strand 2	M	185	190	parallel
Strand 3	M	28	35	anti-parallel
Strand 4	M	87	94	anti-parallel
Strand 5	M	76	82	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	228	232	first strand
Strand 2	M	352	357	parallel
Strand 3	M	237	245	anti-parallel
Strand 4	M	282	291	anti-parallel
Strand 5	M	273	279	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	312	313	first strand
Strand 2	M	345	346	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	94	97	first strand
Strand 2	P	211	214	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	116	120	first strand
Strand 2	P	152	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YIL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YIL