Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJ5 entry

There are 2 chains in PDB entry 8YJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 VAL 2GLY 128
A
 LYS 17LYS 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8YJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
28 30Right-handed 310
Helix 2
AA2
C
61 65Right-handed 310
Helix 3
AA3
C
74 76Right-handed 310
Helix 4
AA4
C
87 91Right-handed 310
Helix 5
AA5
A
25 36Right-handed alpha
Helix 6
AA6
A
57 66Right-handed alpha
Helix 7
AA7
A
83 92Right-handed alpha
Helix 8
AA8
A
124 127Right-handed 310
Helix 9
AA9
A
128 145Right-handed alpha
Helix 10
AB1
A
153 178Right-handed alpha
Helix 11
AB2
A
193 201Right-handed alpha
Helix 12
AB3
A
217 231Right-handed alpha
Helix 13
AB4
A
244 253Right-handed alpha
Helix 14
AB5
A
276 294Right-handed alpha
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There are 6 sheets in PDB entry 8YJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
19 24anti-parallel
Strand 3
C
78 82anti-parallel
Strand 4
C
69 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
32 39anti-parallel
Strand 4
C
92 100anti-parallel
Strand 5
C
114 115anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 58first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
32 39anti-parallel
Strand 4
C
92 100anti-parallel
Strand 5
C
119 121anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
20 24parallel
Strand 3
A
69 72parallel
Strand 4
A
100 102parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
204 205parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
258 262parallel
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