Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJ7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YJ7 entry

There are 5 chains in PDB entry 8YJ7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 1	LYS 279
D	ASP 1	LYS 279
G	GLN 1	GLU 242
A	ASP 1	LYS 279
C	ASP 1	MET 232

There are 57 helices in PDB entry 8YJ7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	21	Right-handed alpha
Helix 2	AA2	B	42	51	Right-handed alpha
Helix 3	AA3	B	68	77	Right-handed alpha
Helix 4	AA4	B	109	112	Right-handed 310
Helix 5	AA5	B	113	132	Right-handed alpha
Helix 6	AA6	B	135	160	Right-handed alpha
Helix 7	AA7	B	165	169	Right-handed 310
Helix 8	AA8	B	178	186	Right-handed alpha
Helix 9	AA9	B	202	216	Right-handed alpha
Helix 10	AB1	B	229	240	Right-handed alpha
Helix 11	AB2	B	261	279	Right-handed alpha
Helix 12	AB3	D	9	21	Right-handed alpha
Helix 13	AB4	D	42	51	Right-handed alpha
Helix 14	AB5	D	68	77	Right-handed alpha
Helix 15	AB6	D	99	103	Right-handed 310
Helix 16	AB7	D	109	112	Right-handed 310
Helix 17	AB8	D	113	132	Right-handed alpha
Helix 18	AB9	D	135	160	Right-handed alpha
Helix 19	AC1	D	165	169	Right-handed 310
Helix 20	AC2	D	178	186	Right-handed alpha
Helix 21	AC3	D	202	216	Right-handed alpha
Helix 22	AC4	D	229	240	Right-handed alpha
Helix 23	AC5	D	261	279	Right-handed alpha
Helix 24	AC6	G	83	87	Right-handed 310
Helix 25	AC7	G	215	219	Right-handed 310
Helix 26	AC8	A	9	21	Right-handed alpha
Helix 27	AC9	A	42	51	Right-handed alpha
Helix 28	AD1	A	68	78	Right-handed alpha
Helix 29	AD2	A	109	112	Right-handed 310
Helix 30	AD3	A	113	132	Right-handed alpha
Helix 31	AD4	A	135	160	Right-handed alpha
Helix 32	AD5	A	165	169	Right-handed 310
Helix 33	AD6	A	178	186	Right-handed alpha
Helix 34	AD7	A	202	216	Right-handed alpha
Helix 35	AD8	A	229	240	Right-handed alpha
Helix 36	AD9	A	261	279	Right-handed alpha
Helix 37	AE1	C	10	21	Right-handed alpha
Helix 38	AE2	C	42	51	Right-handed alpha
Helix 39	AE3	C	68	77	Right-handed alpha
Helix 40	AE4	C	109	112	Right-handed 310
Helix 41	AE5	C	113	132	Right-handed alpha
Helix 42	AE6	C	135	160	Right-handed alpha
Helix 43	AE7	C	165	169	Right-handed 310
Helix 44	AE8	C	178	186	Right-handed alpha
Helix 45	AE9	C	202	216	Right-handed alpha
Helix 46	AF1	C	229	240	Right-handed alpha
Helix 47	AF2	C	261	279	Right-handed alpha
Helix 48	AF3	E	27	31	Right-handed 310
Helix 49	AF4	E	60	63	Right-handed 310
Helix 50	AF5	E	83	87	Right-handed 310
Helix 51	AF6	E	215	219	Right-handed 310
Helix 52	AF7	F	60	63	Right-handed 310
Helix 53	AF8	F	83	87	Right-handed 310
Helix 54	AF9	F	215	219	Right-handed 310
Helix 55	AG1	H	60	63	Right-handed 310
Helix 56	AG2	H	83	87	Right-handed 310
Helix 57	AG3	H	215	219	Right-handed 310

There are 35 sheets in PDB entry 8YJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	28	first strand
Strand 2	B	3	7	parallel
Strand 3	B	54	57	parallel
Strand 4	B	85	87	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	189	190	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	224	first strand
Strand 2	B	243	247	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	28	first strand
Strand 2	D	3	7	parallel
Strand 3	D	54	57	parallel
Strand 4	D	85	87	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	189	190	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	224	first strand
Strand 2	D	243	247	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	6	first strand
Strand 2	G	17	24	anti-parallel
Strand 3	G	74	79	anti-parallel
Strand 4	G	66	70	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	105	109	parallel
Strand 3	G	88	94	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	44	50	anti-parallel
Strand 6	G	56	58	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	141	first strand
Strand 2	G	154	160	anti-parallel
Strand 3	G	206	211	anti-parallel
Strand 4	G	198	203	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	147	first strand
Strand 2	G	240	241	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	189	190	first strand
Strand 2	G	181	185	anti-parallel
Strand 3	G	169	174	anti-parallel
Strand 4	G	221	228	anti-parallel
Strand 5	G	232	235	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	28	first strand
Strand 2	A	3	7	parallel
Strand 3	A	54	57	parallel
Strand 4	A	85	87	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	189	190	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	243	247	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	30	first strand
Strand 2	C	3	9	parallel
Strand 3	C	54	57	parallel
Strand 4	C	85	87	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	175	first strand
Strand 2	C	189	193	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	224	first strand
Strand 2	C	243	247	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	74	79	anti-parallel
Strand 4	E	66	70	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	105	109	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	44	50	anti-parallel
Strand 6	E	56	58	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	105	109	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	100	101	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	154	160	anti-parallel
Strand 3	E	206	211	anti-parallel
Strand 4	E	198	203	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	239	241	parallel
Strand 3	E	221	228	anti-parallel
Strand 4	E	169	174	anti-parallel
Strand 5	E	181	185	anti-parallel
Strand 6	E	189	190	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	239	241	parallel
Strand 3	E	221	228	anti-parallel
Strand 4	E	232	235	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	6	first strand
Strand 2	F	17	24	anti-parallel
Strand 3	F	74	79	anti-parallel
Strand 4	F	66	70	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	105	109	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	44	50	anti-parallel
Strand 6	F	56	58	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	105	109	parallel
Strand 3	F	88	94	anti-parallel
Strand 4	F	100	101	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	141	first strand
Strand 2	F	154	160	anti-parallel
Strand 3	F	206	211	anti-parallel
Strand 4	F	198	203	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	147	first strand
Strand 2	F	240	241	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	189	190	first strand
Strand 2	F	181	185	anti-parallel
Strand 3	F	169	174	anti-parallel
Strand 4	F	221	228	anti-parallel
Strand 5	F	232	235	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	6	first strand
Strand 2	H	17	24	anti-parallel
Strand 3	H	74	79	anti-parallel
Strand 4	H	66	70	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	44	50	anti-parallel
Strand 6	H	56	58	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	105	109	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	100	101	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	154	160	anti-parallel
Strand 3	H	206	211	anti-parallel
Strand 4	H	198	203	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	239	243	parallel
Strand 3	H	221	228	anti-parallel
Strand 4	H	169	174	anti-parallel
Strand 5	H	181	185	anti-parallel
Strand 6	H	189	190	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	239	243	parallel
Strand 3	H	221	228	anti-parallel
Strand 4	H	232	235	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YJ7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJ7