Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJA entry

There are 2 chains in PDB entry 8YJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3592LEU 3762
B
 GLY 3590GLU 3761
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8YJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3597 3601Right-handed 310
Helix 2
AA2
A
3628 3642Right-handed alpha
Helix 3
AA3
A
3663 3667Right-handed 310
Helix 4
AA4
A
3694 3714Right-handed alpha
Helix 5
AA5
A
3731 3749Right-handed alpha
Helix 6
AA6
B
3597 3601Right-handed 310
Helix 7
AA7
B
3628 3642Right-handed alpha
Helix 8
AA8
B
3663 3667Right-handed 310
Helix 9
AA9
B
3694 3714Right-handed alpha
Helix 10
AB1
B
3731 3749Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8YJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3657 3661first strand
Strand 2
A
3646 3651anti-parallel
Strand 3
A
3619 3624parallel
Strand 4
A
3671 3677parallel
Strand 5
A
3721 3726parallel
Strand 6
A
3754 3759parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3679 3684first strand
Strand 2
A
3687 3690anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3657 3661first strand
Strand 2
B
3646 3651anti-parallel
Strand 3
B
3619 3624parallel
Strand 4
B
3671 3677parallel
Strand 5
B
3721 3726parallel
Strand 6
B
3754 3759parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3679 3681first strand
Strand 2
B
3688 3690anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il