Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJF entry

There are 8 chains in PDB entry 8YJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 646ASP 965
B
 ASP 68GLY 127
C
 LYS 56GLU 133
D
 ARG 23GLY 94
E
 THR 58ALA 135
F
 ILE 26THR 96
G
 GLU 35SER 124
H
 THR 16GLY 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8YJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
756 762Right-handed 310
Helix 2
AA2
A
765 791Right-handed alpha
Helix 3
AA3
A
878 887Right-handed alpha
Helix 4
AA4
A
901 912Right-handed alpha
Helix 5
AA5
A
912 919Right-handed alpha
Helix 6
AA6
A
941 945Right-handed alpha
Helix 7
AA7
B
77 82Right-handed 310
Helix 8
AA8
B
106 124Right-handed alpha
Helix 9
AA9
C
63 79Right-handed alpha
Helix 10
AB1
C
85 114Right-handed alpha
Helix 11
AB2
C
120 132Right-handed alpha
Helix 12
AB3
D
30 41Right-handed alpha
Helix 13
AB4
D
49 75Right-handed alpha
Helix 14
AB5
D
82 94Right-handed alpha
Helix 15
AB6
E
63 77Right-handed alpha
Helix 16
AB7
E
85 114Right-handed alpha
Helix 17
AB8
E
120 132Right-handed alpha
Helix 18
AB9
F
30 41Right-handed alpha
Helix 19
AC1
F
49 76Right-handed alpha
Helix 20
AC2
F
82 92Right-handed alpha
Helix 21
AC3
G
37 49Right-handed alpha
Helix 22
AC4
G
55 84Right-handed alpha
Helix 23
AC5
G
90 102Right-handed alpha
Helix 24
AC6
G
103 122Right-handed alpha
Helix 25
AC7
H
17 22Right-handed alpha
Helix 26
AC8
H
26 37Right-handed alpha
Helix 27
AC9
H
46 73Right-handed alpha
Helix 28
AD1
H
79 89Right-handed alpha
Helix 29
AD2
H
90 98Right-handed alpha
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There are 7 sheets in PDB entry 8YJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 700first strand
Strand 2
A
686 691anti-parallel
Strand 3
A
677 682anti-parallel
Strand 4
A
661 668anti-parallel
Strand 5
A
733 743anti-parallel
Strand 6
A
717 730anti-parallel
Strand 7
A
704 710anti-parallel
Strand 8
A
797 798parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
806 808first strand
Strand 2
A
815 819anti-parallel
Strand 3
A
823 826anti-parallel
Strand 4
A
833 836anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
869 875first strand
Strand 2
A
854 861anti-parallel
Strand 3
A
840 846anti-parallel
Strand 4
A
892 895parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
D
80 81parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 84first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 119first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
53 54first strand
Strand 2
H
77 78parallel
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