Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJG entry

There is 1 chain in PDB entry 8YJG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1VAL 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8YJG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
27 50Right-handed alpha
Helix 3
AA3
A
51 58Right-handed 310
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
84 93Right-handed alpha
Helix 6
AA6
A
97 110Right-handed alpha
Helix 7
AA7
A
112 120Right-handed 310
Helix 8
AA8
A
121 128Right-handed 310
Helix 9
AA9
A
178 184Right-handed 310
Helix 10
AB1
A
185 195Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8YJG.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
145 149anti-parallel
Strand 4
A
130 138anti-parallel
Strand 5
A
169 176anti-parallel
Strand 6
A
73 78anti-parallel
Strand 7
A
63 68anti-parallel
Strand 8
A
204 206parallel
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