Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJN entry

There is 1 chain in PDB entry 8YJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8YJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
92 99Right-handed alpha
Helix 5
AA5
A
100 102Right-handed 310
Helix 6
AA6
A
113 128Right-handed alpha
Helix 7
AA7
A
131 138Right-handed alpha
Helix 8
AA8
A
141 151Right-handed alpha
Helix 9
AA9
A
155 160Right-handed alpha
Helix 10
AB1
A
169 190Right-handed alpha
Helix 11
AB2
A
196 232Right-handed alpha
Helix 12
AB3
A
236 254Right-handed alpha
Helix 13
AB4
A
260 279Right-handed alpha
Helix 14
AB5
A
288 293Right-handed alpha
Helix 15
AB6
A
293 302Right-handed alpha
Helix 16
AB7
A
308 326Right-handed alpha
Helix 17
AB8
A
331 337Right-handed alpha
Helix 18
AB9
A
364 378Right-handed alpha
Helix 19
AC1
A
393 406Right-handed alpha
Helix 20
AC2
A
416 427Right-handed alpha
Helix 21
AC3
A
429 435Right-handed alpha
Helix 22
AC4
A
462 470Right-handed alpha
Helix 23
AC5
A
488 492Right-handed 310
Helix 24
AC6
A
496 530Right-handed alpha
Helix 25
AC7
A
532 538Right-handed alpha
Helix 26
AC8
A
541 546Right-handed alpha
Helix 27
AC9
A
548 552Right-handed 310
Helix 28
AD1
A
565 580Right-handed alpha
Helix 29
AD2
A
587 597Right-handed alpha
Helix 30
AD3
A
600 614Right-handed alpha
Helix 31
AD4
A
622 641Right-handed alpha
Helix 32
AD5
A
666 673Right-handed alpha
Helix 33
AD6
A
701 711Right-handed alpha
Helix 34
AD7
A
712 717Right-handed 310
Helix 35
AD8
A
728 733Right-handed 310
Helix 36
AD9
A
734 751Right-handed alpha
Helix 37
AE1
A
763 773Right-handed alpha
Helix 38
AE2
A
792 794Right-handed 310
Helix 39
AE3
A
795 804Right-handed alpha
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There are 6 sheets in PDB entry 8YJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
459 461anti-parallel
Strand 3
A
562 564parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
383 388parallel
Strand 3
A
412 415parallel
Strand 4
A
756 761anti-parallel
Strand 5
A
724 727parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
358 361anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
443 445anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 560first strand
Strand 2
A
653 658parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 783first strand
Strand 2
A
788 790anti-parallel
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