Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJO entry

There are 2 chains in PDB entry 8YJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 765
B
 THR 2LEU 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8YJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
38 54Right-handed alpha
Helix 4
AA4
A
83 90Right-handed alpha
Helix 5
AA5
A
104 114Right-handed alpha
Helix 6
AA6
A
114 120Right-handed alpha
Helix 7
AA7
A
123 132Right-handed alpha
Helix 8
AA8
A
133 142Right-handed alpha
Helix 9
AA9
A
160 183Right-handed alpha
Helix 10
AB1
A
186 216Right-handed alpha
Helix 11
AB2
A
219 237Right-handed alpha
Helix 12
AB3
A
243 263Right-handed alpha
Helix 13
AB4
A
271 276Right-handed alpha
Helix 14
AB5
A
276 286Right-handed alpha
Helix 15
AB6
A
289 305Right-handed alpha
Helix 16
AB7
A
312 319Right-handed alpha
Helix 17
AB8
A
342 356Right-handed alpha
Helix 18
AB9
A
371 383Right-handed alpha
Helix 19
AC1
A
394 403Right-handed alpha
Helix 20
AC2
A
407 413Right-handed alpha
Helix 21
AC3
A
439 450Right-handed alpha
Helix 22
AC4
A
457 491Right-handed alpha
Helix 23
AC5
A
493 499Right-handed alpha
Helix 24
AC6
A
502 507Right-handed alpha
Helix 25
AC7
A
509 513Right-handed 310
Helix 26
AC8
A
526 541Right-handed alpha
Helix 27
AC9
A
548 558Right-handed alpha
Helix 28
AD1
A
562 575Right-handed alpha
Helix 29
AD2
A
583 602Right-handed alpha
Helix 30
AD3
A
621 627Right-handed alpha
Helix 31
AD4
A
657 667Right-handed alpha
Helix 32
AD5
A
668 673Right-handed 310
Helix 33
AD6
A
685 688Right-handed 310
Helix 34
AD7
A
689 708Right-handed alpha
Helix 35
AD8
A
718 728Right-handed alpha
Helix 36
AD9
A
729 732Right-handed 310
Helix 37
AE1
A
747 749Right-handed 310
Helix 38
AE2
A
750 760Right-handed alpha
Helix 39
AE3
B
3 14Right-handed alpha
Helix 40
AE4
B
21 34Right-handed alpha
Helix 41
AE5
B
38 54Right-handed alpha
Helix 42
AE6
B
83 90Right-handed alpha
Helix 43
AE7
B
104 114Right-handed alpha
Helix 44
AE8
B
114 120Right-handed alpha
Helix 45
AE9
B
123 132Right-handed alpha
Helix 46
AF1
B
133 142Right-handed alpha
Helix 47
AF2
B
160 183Right-handed alpha
Helix 48
AF3
B
186 216Right-handed alpha
Helix 49
AF4
B
219 237Right-handed alpha
Helix 50
AF5
B
243 263Right-handed alpha
Helix 51
AF6
B
271 276Right-handed alpha
Helix 52
AF7
B
276 286Right-handed alpha
Helix 53
AF8
B
289 305Right-handed alpha
Helix 54
AF9
B
312 319Right-handed alpha
Helix 55
AG1
B
342 356Right-handed alpha
Helix 56
AG2
B
371 383Right-handed alpha
Helix 57
AG3
B
394 404Right-handed alpha
Helix 58
AG4
B
407 413Right-handed alpha
Helix 59
AG5
B
439 450Right-handed alpha
Helix 60
AG6
B
457 491Right-handed alpha
Helix 61
AG7
B
493 499Right-handed alpha
Helix 62
AG8
B
502 507Right-handed alpha
Helix 63
AG9
B
509 513Right-handed 310
Helix 64
AH1
B
526 541Right-handed alpha
Helix 65
AH2
B
548 558Right-handed alpha
Helix 66
AH3
B
562 575Right-handed alpha
Helix 67
AH4
B
583 602Right-handed alpha
Helix 68
AH5
B
621 628Right-handed alpha
Helix 69
AH6
B
657 667Right-handed alpha
Helix 70
AH7
B
668 673Right-handed 310
Helix 71
AH8
B
685 688Right-handed 310
Helix 72
AH9
B
689 707Right-handed alpha
Helix 73
AI1
B
718 728Right-handed alpha
Helix 74
AI2
B
729 732Right-handed 310
Helix 75
AI3
B
747 749Right-handed 310
Helix 76
AI4
B
750 760Right-handed alpha
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There are 13 sheets in PDB entry 8YJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
75 76parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
435 438anti-parallel
Strand 3
A
517 525parallel
Strand 4
A
428 429parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
435 438anti-parallel
Strand 3
A
517 525parallel
Strand 4
A
611 616parallel
Strand 5
A
676 677parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 331first strand
Strand 2
A
361 366parallel
Strand 3
A
390 393parallel
Strand 4
A
711 716anti-parallel
Strand 5
A
680 683parallel
Strand 6
A
762 763parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 417first strand
Strand 2
A
421 423anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 738first strand
Strand 2
A
743 745anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
75 76parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
435 438anti-parallel
Strand 3
B
517 525parallel
Strand 4
B
428 429parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 147first strand
Strand 2
B
435 438anti-parallel
Strand 3
B
517 525parallel
Strand 4
B
611 616parallel
Strand 5
B
676 677parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
267 268parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 331first strand
Strand 2
B
361 366parallel
Strand 3
B
390 393parallel
Strand 4
B
711 716anti-parallel
Strand 5
B
680 683parallel
Strand 6
B
762 763parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
415 417first strand
Strand 2
B
421 423anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
736 738first strand
Strand 2
B
743 745anti-parallel
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