Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJP entry

There are 2 chains in PDB entry 8YJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 22GLU 319
B
 ARG 22GLU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8YJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 34Right-handed alpha
Helix 2
AA2
A
46 74Right-handed alpha
Helix 3
AA3
A
77 83Right-handed alpha
Helix 4
AA4
A
84 106Right-handed alpha
Helix 5
AA5
A
114 150Right-handed alpha
Helix 6
AA6
A
161 187Right-handed alpha
Helix 7
AA7
A
220 246Right-handed alpha
Helix 8
AA8
A
251 256Right-handed alpha
Helix 9
AA9
A
256 281Right-handed alpha
Helix 10
AB1
A
284 319Right-handed alpha
Helix 11
AB2
B
23 34Right-handed alpha
Helix 12
AB3
B
48 74Right-handed alpha
Helix 13
AB4
B
77 83Right-handed alpha
Helix 14
AB5
B
84 106Right-handed alpha
Helix 15
AB6
B
114 151Right-handed alpha
Helix 16
AB7
B
161 187Right-handed alpha
Helix 17
AB8
B
220 246Right-handed alpha
Helix 18
AB9
B
251 256Right-handed alpha
Helix 19
AC1
B
256 281Right-handed alpha
Helix 20
AC2
B
284 319Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8YJP.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 216first strand
Strand 2
A
191 201anti-parallel
Strand 3
B
190 201anti-parallel
Strand 4
B
206 217anti-parallel
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