Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YJX entry

There are 2 chains in PDB entry 8YJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 39	LYS 601
B	PRO 39	LYS 601

There are 52 helices in PDB entry 8YJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	84	97	Right-handed alpha
Helix 3	AA3	A	101	113	Right-handed alpha
Helix 4	AA4	A	129	133	Right-handed alpha
Helix 5	AA5	A	135	141	Right-handed alpha
Helix 6	AA6	A	161	166	Right-handed alpha
Helix 7	AA7	A	174	179	Right-handed alpha
Helix 8	AA8	A	191	197	Right-handed alpha
Helix 9	AA9	A	197	203	Right-handed alpha
Helix 10	AB1	A	237	248	Right-handed alpha
Helix 11	AB2	A	276	282	Right-handed alpha
Helix 12	AB3	A	284	293	Right-handed alpha
Helix 13	AB4	A	301	306	Right-handed alpha
Helix 14	AB5	A	310	313	Right-handed 310
Helix 15	AB6	A	314	323	Right-handed alpha
Helix 16	AB7	A	360	367	Right-handed alpha
Helix 17	AB8	A	368	380	Right-handed alpha
Helix 18	AB9	A	380	391	Right-handed alpha
Helix 19	AC1	A	411	420	Right-handed alpha
Helix 20	AC2	A	424	433	Right-handed alpha
Helix 21	AC3	A	441	455	Right-handed alpha
Helix 22	AC4	A	486	492	Right-handed alpha
Helix 23	AC5	A	492	506	Right-handed alpha
Helix 24	AC6	A	511	516	Right-handed alpha
Helix 25	AC7	A	535	542	Right-handed alpha
Helix 26	AC8	A	543	552	Right-handed 310
Helix 27	AC9	A	576	578	Right-handed 310
Helix 28	AD1	A	582	597	Right-handed alpha
Helix 29	AD2	B	87	94	Right-handed alpha
Helix 30	AD3	B	129	133	Right-handed alpha
Helix 31	AD4	B	135	141	Right-handed alpha
Helix 32	AD5	B	161	166	Right-handed alpha
Helix 33	AD6	B	172	177	Right-handed alpha
Helix 34	AD7	B	179	186	Right-handed alpha
Helix 35	AD8	B	191	197	Right-handed alpha
Helix 36	AD9	B	197	202	Right-handed alpha
Helix 37	AE1	B	237	249	Right-handed alpha
Helix 38	AE2	B	284	293	Right-handed alpha
Helix 39	AE3	B	301	306	Right-handed alpha
Helix 40	AE4	B	310	313	Right-handed 310
Helix 41	AE5	B	314	324	Right-handed alpha
Helix 42	AE6	B	359	367	Right-handed alpha
Helix 43	AE7	B	368	380	Right-handed alpha
Helix 44	AE8	B	380	391	Right-handed alpha
Helix 45	AE9	B	411	420	Right-handed alpha
Helix 46	AF1	B	424	433	Right-handed alpha
Helix 47	AF2	B	441	455	Right-handed alpha
Helix 48	AF3	B	486	505	Right-handed alpha
Helix 49	AF4	B	511	516	Right-handed alpha
Helix 50	AF5	B	545	552	Right-handed alpha
Helix 51	AF6	B	576	578	Right-handed 310
Helix 52	AF7	B	582	597	Right-handed alpha

There are 12 sheets in PDB entry 8YJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	220	225	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	128	first strand
Strand 2	A	60	72	anti-parallel
Strand 3	A	145	154	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	128	first strand
Strand 2	A	60	72	anti-parallel
Strand 3	A	53	54	anti-parallel
Strand 4	A	232	234	parallel
Strand 5	A	463	468	anti-parallel
Strand 6	A	471	472	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	170	first strand
Strand 2	A	187	189	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	271	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	568	574	anti-parallel
Strand 4	A	554	561	anti-parallel
Strand 5	A	523	529	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	356	359	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	342	first strand
Strand 2	A	345	348	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	206	212	anti-parallel
Strand 3	B	218	225	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	60	68	anti-parallel
Strand 3	B	151	154	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	60	68	anti-parallel
Strand 3	B	53	54	anti-parallel
Strand 4	B	232	234	parallel
Strand 5	B	463	466	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	187	189	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	271	first strand
Strand 2	B	253	259	anti-parallel
Strand 3	B	568	574	anti-parallel
Strand 4	B	554	561	anti-parallel
Strand 5	B	523	529	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJX