Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YJY entry

There are 2 chains in PDB entry 8YJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5TYR 405
B
 VAL 4ASN 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8YJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 30Right-handed alpha
Helix 2
AA2
A
32 52Right-handed alpha
Helix 3
AA3
A
67 72Right-handed alpha
Helix 4
AA4
A
91 95Right-handed 310
Helix 5
AA5
A
98 113Right-handed alpha
Helix 6
AA6
A
113 119Right-handed alpha
Helix 7
AA7
A
168 182Right-handed alpha
Helix 8
AA8
A
212 232Right-handed alpha
Helix 9
AA9
A
233 239Right-handed alpha
Helix 10
AB1
A
242 261Right-handed alpha
Helix 11
AB2
A
266 278Right-handed alpha
Helix 12
AB3
A
279 282Right-handed 310
Helix 13
AB4
A
302 307Right-handed alpha
Helix 14
AB5
A
308 310Right-handed 310
Helix 15
AB6
A
311 337Right-handed alpha
Helix 16
AB7
A
339 352Right-handed alpha
Helix 17
AB8
A
352 374Right-handed alpha
Helix 18
AB9
B
14 25Right-handed alpha
Helix 19
AC1
B
76 81Right-handed alpha
Helix 20
AC2
B
121 141Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8YJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
86 90anti-parallel
Strand 3
A
137 140parallel
Strand 4
A
127 129anti-parallel
Strand 5
A
120 122anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
165 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
385 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
55 62anti-parallel
Strand 4
B
65 71anti-parallel
Strand 5
B
98 100anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il