Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YJZ entry

There are 8 chains in PDB entry 8YJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASP 257
D	MET 1	LYS 354
H	MET 1	LEU 299
G	GLY 12	LYS 233
I	HIS 12	ASP 164
C	MET 1	ASP 257
A	MET 1	GLU 256
J	A 3	A 3

There are 58 helices in PDB entry 8YJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	19	Right-handed alpha
Helix 2	AA2	B	20	22	Right-handed 310
Helix 3	AA3	B	71	80	Right-handed alpha
Helix 4	AA4	B	141	153	Right-handed alpha
Helix 5	AA5	B	209	216	Right-handed alpha
Helix 6	AA6	B	217	219	Right-handed 310
Helix 7	AA7	D	5	14	Right-handed alpha
Helix 8	AA8	D	22	26	Right-handed 310
Helix 9	AA9	D	35	46	Right-handed alpha
Helix 10	AB1	D	61	76	Right-handed alpha
Helix 11	AB2	D	93	118	Right-handed alpha
Helix 12	AB3	D	120	131	Right-handed alpha
Helix 13	AB4	D	134	149	Right-handed alpha
Helix 14	AB5	D	158	169	Right-handed alpha
Helix 15	AB6	D	180	186	Right-handed alpha
Helix 16	AB7	D	209	216	Right-handed alpha
Helix 17	AB8	D	219	231	Right-handed alpha
Helix 18	AB9	D	243	254	Right-handed alpha
Helix 19	AC1	D	255	262	Right-handed alpha
Helix 20	AC2	D	275	285	Right-handed alpha
Helix 21	AC3	D	303	313	Right-handed alpha
Helix 22	AC4	D	317	335	Right-handed alpha
Helix 23	AC5	D	339	344	Right-handed 310
Helix 24	AC6	H	3	9	Right-handed alpha
Helix 25	AC7	H	53	55	Right-handed 310
Helix 26	AC8	H	56	62	Right-handed alpha
Helix 27	AC9	H	72	84	Right-handed alpha
Helix 28	AD1	H	97	105	Right-handed alpha
Helix 29	AD2	H	112	131	Right-handed alpha
Helix 30	AD3	H	146	157	Right-handed alpha
Helix 31	AD4	H	172	192	Right-handed alpha
Helix 32	AD5	H	213	223	Right-handed alpha
Helix 33	AD6	H	238	248	Right-handed alpha
Helix 34	AD7	H	268	273	Right-handed alpha
Helix 35	AD8	H	285	292	Right-handed alpha
Helix 36	AD9	G	21	25	Right-handed 310
Helix 37	AE1	G	93	105	Right-handed alpha
Helix 38	AE2	G	106	108	Right-handed 310
Helix 39	AE3	G	124	130	Right-handed 310
Helix 40	AE4	G	133	140	Right-handed alpha
Helix 41	AE5	G	159	167	Right-handed alpha
Helix 42	AE6	G	167	182	Right-handed alpha
Helix 43	AE7	G	207	218	Right-handed alpha
Helix 44	AE8	G	221	226	Right-handed alpha
Helix 45	AE9	G	227	232	Right-handed alpha
Helix 46	AF1	I	138	141	Right-handed 310
Helix 47	AF2	I	142	147	Right-handed alpha
Helix 48	AF3	I	149	155	Right-handed alpha
Helix 49	AF4	C	9	20	Right-handed alpha
Helix 50	AF5	C	55	57	Right-handed 310
Helix 51	AF6	C	72	80	Right-handed alpha
Helix 52	AF7	C	141	152	Right-handed alpha
Helix 53	AF8	C	209	216	Right-handed alpha
Helix 54	AF9	A	9	20	Right-handed alpha
Helix 55	AG1	A	54	57	Right-handed 310
Helix 56	AG2	A	72	80	Right-handed alpha
Helix 57	AG3	A	141	153	Right-handed alpha
Helix 58	AG4	A	209	216	Right-handed alpha

There are 14 sheets in PDB entry 8YJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	98	104	anti-parallel
Strand 4	B	111	117	anti-parallel
Strand 5	A	179	181	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	46	51	anti-parallel
Strand 4	B	246	251	anti-parallel
Strand 5	B	235	240	anti-parallel
Strand 6	B	224	229	anti-parallel
Strand 7	B	135	140	anti-parallel
Strand 8	B	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	167	172	anti-parallel
Strand 4	B	177	182	anti-parallel
Strand 5	C	110	117	anti-parallel
Strand 6	C	98	104	anti-parallel
Strand 7	C	87	91	anti-parallel
Strand 8	C	3	5	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	204	208	anti-parallel
Strand 3	D	189	192	anti-parallel
Strand 4	D	175	176	parallel
Strand 5	D	29	34	parallel
Strand 6	D	79	86	parallel
Strand 7	D	152	155	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	51	52	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	350	first strand
Strand 2	C	122	124	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	90	96	anti-parallel
Strand 3	H	45	51	anti-parallel
Strand 4	H	29	36	anti-parallel
Strand 5	H	135	140	parallel
Strand 6	H	161	164	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	295	first strand
Strand 2	G	61	66	anti-parallel
Strand 3	G	85	90	anti-parallel
Strand 4	G	15	20	parallel
Strand 5	I	80	85	anti-parallel
Strand 6	I	117	126	anti-parallel
Strand 7	I	13	16	parallel
Strand 8	G	35	41	anti-parallel
Strand 9	G	48	54	anti-parallel
Strand 10	G	61	66	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	I	29	32	anti-parallel
Strand 3	I	129	134	parallel
Strand 4	I	66	73	anti-parallel
Strand 5	I	58	63	anti-parallel
Strand 6	I	53	55	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	25	30	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	46	53	anti-parallel
Strand 5	C	245	251	anti-parallel
Strand 6	C	236	241	anti-parallel
Strand 7	C	224	229	anti-parallel
Strand 8	C	135	140	anti-parallel
Strand 9	C	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	157	161	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	178	183	anti-parallel
Strand 5	A	110	116	anti-parallel
Strand 6	A	99	104	anti-parallel
Strand 7	A	87	92	anti-parallel
Strand 8	A	4	6	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	67	71	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	245	249	anti-parallel
Strand 3	A	236	241	anti-parallel
Strand 4	A	224	229	anti-parallel
Strand 5	A	135	140	anti-parallel
Strand 6	A	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	172	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	205	207	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YJZ