Analysis of interatomic Contacts of Structural Units in PDB entry:
8YK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YK3 entry

There are 2 chains in PDB entry 8YK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 26LEU 674
B
 GLY 26PRO 673
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8YK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed 310
Helix 2
AA2
A
44 62Right-handed alpha
Helix 3
AA3
A
252 258Right-handed alpha
Helix 4
AA4
A
653 657Right-handed 310
Helix 5
AA5
A
658 662Right-handed 310
Helix 6
AA6
B
32 35Right-handed 310
Helix 7
AA7
B
44 61Right-handed alpha
Helix 8
AA8
B
95 98Right-handed 310
Helix 9
AA9
B
227 231Right-handed 310
Helix 10
AB1
B
653 655Right-handed 310
Helix 11
AB2
B
659 662Right-handed 310
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There are 18 sheets in PDB entry 8YK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
121 124parallel
Strand 3
A
140 148parallel
Strand 4
A
283 290parallel
Strand 5
A
306 309parallel
Strand 6
A
338 342parallel
Strand 7
A
461 465parallel
Strand 8
A
485 488parallel
Strand 9
A
518 519parallel
Strand 10
A
552 555parallel
Strand 11
A
575 578parallel
Strand 12
A
633 635parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
140 148parallel
Strand 3
A
283 290parallel
Strand 4
A
312 313parallel
Strand 5
A
345 347parallel
Strand 6
A
468 470parallel
Strand 7
A
491 493parallel
Strand 8
A
524 526parallel
Strand 9
A
558 561parallel
Strand 10
A
581 584parallel
Strand 11
A
638 639parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
100 103anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
131 137parallel
Strand 3
A
275 281parallel
Strand 4
A
298 301parallel
Strand 5
A
330 333parallel
Strand 6
A
354 357parallel
Strand 7
A
477 479parallel
Strand 8
A
500 502parallel
Strand 9
A
533 535parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
208 213anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
167 169anti-parallel
Strand 3
A
245 248anti-parallel
Strand 4
A
233 237anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
202 203anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
392 397anti-parallel
Strand 3
A
409 417anti-parallel
Strand 4
A
423 424anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
392 397anti-parallel
Strand 3
A
451 455anti-parallel
Strand 4
A
361 366anti-parallel
Strand 5
A
371 375anti-parallel
Strand 6
A
433 438anti-parallel
Strand 7
A
409 417anti-parallel
Strand 8
A
423 424anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 568first strand
Strand 2
A
624 627parallel
Strand 3
A
646 650parallel
Strand 4
A
665 666parallel
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There are 14 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
65 68parallel
Strand 3
B
111 116parallel
Strand 4
B
129 142parallel
Strand 5
B
275 286parallel
Strand 6
B
304 309parallel
Strand 7
B
336 342parallel
Strand 8
B
460 465parallel
Strand 9
B
485 488parallel
Strand 10
B
520 521parallel
Strand 11
B
549 555parallel
Strand 12
B
572 578parallel
Strand 13
B
632 634parallel
Strand 14
B
657 658parallel
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There are 14 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
100 105anti-parallel
Strand 3
B
129 142parallel
Strand 4
B
275 286parallel
Strand 5
B
298 301parallel
Strand 6
B
330 333parallel
Strand 7
B
354 357parallel
Strand 8
B
477 479parallel
Strand 9
B
500 502parallel
Strand 10
B
533 535parallel
Strand 11
B
567 570parallel
Strand 12
B
624 627parallel
Strand 13
B
646 650parallel
Strand 14
B
665 666parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
121 124parallel
Strand 3
B
146 148parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 161first strand
Strand 2
B
168 171anti-parallel
Strand 3
B
243 248anti-parallel
Strand 4
B
233 237anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 181first strand
Strand 2
B
184 188anti-parallel
Strand 3
B
201 203anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
264 266anti-parallel
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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 290first strand
Strand 2
B
312 313parallel
Strand 3
B
345 347parallel
Strand 4
B
468 472parallel
Strand 5
B
491 495parallel
Strand 6
B
524 526parallel
Strand 7
B
558 561parallel
Strand 8
B
581 584parallel
Strand 9
B
638 639parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 403first strand
Strand 2
B
392 397anti-parallel
Strand 3
B
451 455anti-parallel
Strand 4
B
361 365anti-parallel
Strand 5
B
371 375anti-parallel
Strand 6
B
433 438anti-parallel
Strand 7
B
409 415anti-parallel
Strand 8
B
392 397anti-parallel
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