Analysis of interatomic Contacts of Structural Units in PDB entry:
8YKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YKC entry

There are 3 chains in PDB entry 8YKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PHE 184
B
 GLY 5PHE 184
C
 ASP 6PHE 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8YKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
46 60Right-handed alpha
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
91 103Right-handed alpha
Helix 5
AA5
A
106 117Right-handed alpha
Helix 6
AA6
A
139 160Right-handed alpha
Helix 7
AA7
B
20 31Right-handed alpha
Helix 8
AA8
B
47 59Right-handed alpha
Helix 9
AA9
B
72 81Right-handed alpha
Helix 10
AB1
B
91 103Right-handed alpha
Helix 11
AB2
B
106 120Right-handed alpha
Helix 12
AB3
B
139 160Right-handed alpha
Helix 13
AB4
C
20 30Right-handed alpha
Helix 14
AB5
C
72 81Right-handed alpha
Helix 15
AB6
C
91 103Right-handed alpha
Helix 16
AB7
C
106 119Right-handed alpha
Helix 17
AB8
C
139 160Right-handed alpha
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There are 3 sheets in PDB entry 8YKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
35 40parallel
Strand 3
A
85 89parallel
Strand 4
A
124 129parallel
Strand 5
A
10 15parallel
Strand 6
A
162 167parallel
Strand 7
A
170 175anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 68first strand
Strand 2
B
35 40parallel
Strand 3
B
85 89parallel
Strand 4
B
124 129parallel
Strand 5
B
10 15parallel
Strand 6
B
162 167parallel
Strand 7
B
170 175anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 68first strand
Strand 2
C
35 40parallel
Strand 3
C
85 89parallel
Strand 4
C
124 129parallel
Strand 5
C
10 15parallel
Strand 6
C
162 167parallel
Strand 7
C
170 175anti-parallel
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