Analysis of interatomic Contacts of Structural Units in PDB entry:
8YKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YKS entry

There are 2 chains in PDB entry 8YKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP -10HIS 316
A
 TYR -3ILE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8YKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 13Right-handed alpha
Helix 2
AA2
B
14 18Right-handed 310
Helix 3
AA3
B
60 79Right-handed alpha
Helix 4
AA4
B
96 115Right-handed alpha
Helix 5
AA5
B
162 172Right-handed alpha
Helix 6
AA6
B
178 191Right-handed alpha
Helix 7
AA7
B
195 202Right-handed alpha
Helix 8
AA8
B
215 228Right-handed alpha
Helix 9
AA9
B
236 238Right-handed 310
Helix 10
AB1
B
241 248Right-handed alpha
Helix 11
AB2
B
249 260Right-handed alpha
Helix 12
AB3
B
271 273Right-handed 310
Helix 13
AB4
B
274 282Right-handed alpha
Helix 14
AB5
A
2 13Right-handed alpha
Helix 15
AB6
A
14 18Right-handed 310
Helix 16
AB7
A
60 78Right-handed alpha
Helix 17
AB8
A
96 115Right-handed alpha
Helix 18
AB9
A
162 172Right-handed alpha
Helix 19
AC1
A
178 191Right-handed alpha
Helix 20
AC2
A
195 203Right-handed alpha
Helix 21
AC3
A
215 228Right-handed alpha
Helix 22
AC4
A
236 238Right-handed 310
Helix 23
AC5
A
241 246Right-handed alpha
Helix 24
AC6
A
249 260Right-handed alpha
Helix 25
AC7
A
271 273Right-handed 310
Helix 26
AC8
A
274 282Right-handed alpha
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There are 6 sheets in PDB entry 8YKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
33 34anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 50first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
82 92anti-parallel
Strand 4
B
117 125parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 211first strand
Strand 2
B
266 270anti-parallel
Strand 3
B
154 157anti-parallel
Strand 4
B
286 292anti-parallel
Strand 5
B
230 234anti-parallel
Strand 6
B
296 300parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
33 34anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 50first strand
Strand 2
A
129 138anti-parallel
Strand 3
A
82 92anti-parallel
Strand 4
A
117 125parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
154 157anti-parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
230 234anti-parallel
Strand 6
A
296 300parallel
Strand 7
A
306 307anti-parallel
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