Analysis of interatomic Contacts of Structural Units in PDB entry:
8YKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YKU entry

There is 1 chain in PDB entry 8YKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8YKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
14 18Right-handed 310
Helix 3
AA3
A
60 78Right-handed alpha
Helix 4
AA4
A
96 115Right-handed alpha
Helix 5
AA5
A
162 172Right-handed alpha
Helix 6
AA6
A
178 191Right-handed alpha
Helix 7
AA7
A
195 203Right-handed alpha
Helix 8
AA8
A
215 228Right-handed alpha
Helix 9
AA9
A
236 238Right-handed 310
Helix 10
AB1
A
241 246Right-handed alpha
Helix 11
AB2
A
249 260Right-handed alpha
Helix 12
AB3
A
271 273Right-handed 310
Helix 13
AB4
A
274 282Right-handed alpha
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There are 3 sheets in PDB entry 8YKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
33 34anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 50first strand
Strand 2
A
129 138anti-parallel
Strand 3
A
82 92anti-parallel
Strand 4
A
117 125parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
154 157anti-parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
230 234anti-parallel
Strand 6
A
296 300parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il