Analysis of interatomic Contacts of Structural Units in PDB entry:
8YL5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YL5 entry

There are 6 chains in PDB entry 8YL5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	ILE 1005
B	LYS 9	ILE 1005
C	LYS 14	ILE 1005
D	LYS 9	ILE 1005
E	LYS 6	ASP 120
F	LYS 6	ASP 120

There are248 helices in PDB entry 8YL5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	22	Right-handed alpha
Helix 2	AA2	A	23	39	Right-handed alpha
Helix 3	AA3	A	49	54	Right-handed alpha
Helix 4	AA4	A	58	71	Right-handed alpha
Helix 5	AA5	A	80	95	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	115	124	Right-handed alpha
Helix 8	AA8	A	136	146	Right-handed alpha
Helix 9	AA9	A	186	192	Right-handed alpha
Helix 10	AB1	A	192	197	Right-handed alpha
Helix 11	AB2	A	197	209	Right-handed alpha
Helix 12	AB3	A	222	235	Right-handed alpha
Helix 13	AB4	A	254	263	Right-handed alpha
Helix 14	AB5	A	271	275	Right-handed alpha
Helix 15	AB6	A	281	290	Right-handed alpha
Helix 16	AB7	A	294	299	Right-handed 310
Helix 17	AB8	A	306	317	Right-handed alpha
Helix 18	AB9	A	318	321	Right-handed 310
Helix 19	AC1	A	329	334	Right-handed alpha
Helix 20	AC2	A	355	366	Right-handed alpha
Helix 21	AC3	A	366	373	Right-handed alpha
Helix 22	AC4	A	377	392	Right-handed alpha
Helix 23	AC5	A	411	416	Right-handed alpha
Helix 24	AC6	A	417	427	Right-handed alpha
Helix 25	AC7	A	431	444	Right-handed alpha
Helix 26	AC8	A	447	462	Right-handed alpha
Helix 27	AC9	A	468	500	Right-handed alpha
Helix 28	AD1	A	508	519	Right-handed alpha
Helix 29	AD2	A	523	527	Right-handed 310
Helix 30	AD3	A	532	539	Right-handed alpha
Helix 31	AD4	A	540	547	Right-handed 310
Helix 32	AD5	A	548	550	Right-handed 310
Helix 33	AD6	A	551	572	Right-handed alpha
Helix 34	AD7	A	581	597	Right-handed alpha
Helix 35	AD8	A	598	599	Right-handed 310
Helix 36	AD9	A	600	604	Right-handed 310
Helix 37	AE1	A	605	628	Right-handed alpha
Helix 38	AE2	A	628	634	Right-handed alpha
Helix 39	AE3	A	648	658	Right-handed alpha
Helix 40	AE4	A	660	671	Right-handed alpha
Helix 41	AE5	A	672	676	Right-handed 310
Helix 42	AE6	A	680	701	Right-handed alpha
Helix 43	AE7	A	705	723	Right-handed alpha
Helix 44	AE8	A	724	726	Right-handed 310
Helix 45	AE9	A	729	743	Right-handed alpha
Helix 46	AF1	A	750	761	Right-handed alpha
Helix 47	AF2	A	768	786	Right-handed alpha
Helix 48	AF3	A	800	812	Right-handed alpha
Helix 49	AF4	A	818	826	Right-handed alpha
Helix 50	AF5	A	831	840	Right-handed alpha
Helix 51	AF6	A	841	845	Right-handed 310
Helix 52	AF7	A	846	857	Right-handed alpha
Helix 53	AF8	A	861	872	Right-handed alpha
Helix 54	AF9	A	878	903	Right-handed alpha
Helix 55	AG1	A	911	922	Right-handed alpha
Helix 56	AG2	A	927	934	Right-handed 310
Helix 57	AG3	A	937	945	Right-handed alpha
Helix 58	AG4	A	950	954	Right-handed 310
Helix 59	AG5	A	955	956	Right-handed 310
Helix 60	AG6	A	957	962	Right-handed alpha
Helix 61	AG7	A	963	973	Right-handed alpha
Helix 62	AG8	A	976	991	Right-handed alpha
Helix 63	AG9	A	994	1003	Right-handed alpha
Helix 64	AH1	B	10	19	Right-handed alpha
Helix 65	AH2	B	23	39	Right-handed alpha
Helix 66	AH3	B	48	54	Right-handed alpha
Helix 67	AH4	B	58	72	Right-handed alpha
Helix 68	AH5	B	80	96	Right-handed alpha
Helix 69	AH6	B	96	109	Right-handed alpha
Helix 70	AH7	B	115	124	Right-handed alpha
Helix 71	AH8	B	136	146	Right-handed alpha
Helix 72	AH9	B	154	158	Right-handed 310
Helix 73	AI1	B	179	183	Right-handed 310
Helix 74	AI2	B	186	192	Right-handed alpha
Helix 75	AI3	B	192	197	Right-handed alpha
Helix 76	AI4	B	197	210	Right-handed alpha
Helix 77	AI5	B	222	233	Right-handed alpha
Helix 78	AI6	B	254	264	Right-handed alpha
Helix 79	AI7	B	271	275	Right-handed alpha
Helix 80	AI8	B	281	298	Right-handed alpha
Helix 81	AI9	B	304	316	Right-handed alpha
Helix 82	AJ1	B	317	322	Right-handed 310
Helix 83	AJ2	B	326	334	Right-handed alpha
Helix 84	AJ3	B	355	366	Right-handed alpha
Helix 85	AJ4	B	366	373	Right-handed alpha
Helix 86	AJ5	B	374	392	Right-handed alpha
Helix 87	AJ6	B	411	415	Right-handed 310
Helix 88	AJ7	B	417	427	Right-handed alpha
Helix 89	AJ8	B	431	445	Right-handed alpha
Helix 90	AJ9	B	447	466	Right-handed alpha
Helix 91	AK1	B	467	500	Right-handed alpha
Helix 92	AK2	B	508	519	Right-handed alpha
Helix 93	AK3	B	523	527	Right-handed 310
Helix 94	AK4	B	532	539	Right-handed alpha
Helix 95	AK5	B	540	547	Right-handed 310
Helix 96	AK6	B	551	557	Right-handed alpha
Helix 97	AK7	B	558	563	Right-handed 310
Helix 98	AK8	B	564	569	Right-handed alpha
Helix 99	AK9	B	579	598	Right-handed alpha
Helix 100	AL1	B	600	604	Right-handed 310
Helix 101	AL2	B	605	634	Right-handed alpha
Helix 102	AL3	B	648	659	Right-handed alpha
Helix 103	AL4	B	660	669	Right-handed alpha
Helix 104	AL5	B	672	676	Right-handed 310
Helix 105	AL6	B	680	701	Right-handed alpha
Helix 106	AL7	B	705	711	Right-handed alpha
Helix 107	AL8	B	712	723	Right-handed alpha
Helix 108	AL9	B	724	726	Right-handed 310
Helix 109	AM1	B	729	743	Right-handed alpha
Helix 110	AM2	B	750	762	Right-handed alpha
Helix 111	AM3	B	768	786	Right-handed alpha
Helix 112	AM4	B	800	812	Right-handed alpha
Helix 113	AM5	B	817	826	Right-handed alpha
Helix 114	AM6	B	831	840	Right-handed alpha
Helix 115	AM7	B	841	845	Right-handed 310
Helix 116	AM8	B	846	855	Right-handed alpha
Helix 117	AM9	B	861	871	Right-handed alpha
Helix 118	AN1	B	878	903	Right-handed alpha
Helix 119	AN2	B	911	922	Right-handed alpha
Helix 120	AN3	B	928	932	Right-handed 310
Helix 121	AN4	B	937	945	Right-handed alpha
Helix 122	AN5	B	950	954	Right-handed 310
Helix 123	AN6	B	955	961	Right-handed 310
Helix 124	AN7	B	963	973	Right-handed alpha
Helix 125	AN8	B	976	992	Right-handed alpha
Helix 126	AN9	B	993	1003	Right-handed alpha
Helix 127	AO1	C	15	21	Right-handed alpha
Helix 128	AO2	C	23	40	Right-handed alpha
Helix 129	AO3	C	48	54	Right-handed alpha
Helix 130	AO4	C	58	71	Right-handed alpha
Helix 131	AO5	C	82	96	Right-handed alpha
Helix 132	AO6	C	97	109	Right-handed alpha
Helix 133	AO7	C	115	124	Right-handed alpha
Helix 134	AO8	C	136	146	Right-handed alpha
Helix 135	AO9	C	186	192	Right-handed alpha
Helix 136	AP1	C	192	197	Right-handed alpha
Helix 137	AP2	C	197	211	Right-handed alpha
Helix 138	AP3	C	222	236	Right-handed alpha
Helix 139	AP4	C	254	264	Right-handed alpha
Helix 140	AP5	C	271	275	Right-handed alpha
Helix 141	AP6	C	281	288	Right-handed alpha
Helix 142	AP7	C	291	297	Right-handed alpha
Helix 143	AP8	C	304	317	Right-handed alpha
Helix 144	AP9	C	318	322	Right-handed 310
Helix 145	AQ1	C	329	334	Right-handed alpha
Helix 146	AQ2	C	355	366	Right-handed alpha
Helix 147	AQ3	C	366	373	Right-handed alpha
Helix 148	AQ4	C	374	392	Right-handed alpha
Helix 149	AQ5	C	411	416	Right-handed alpha
Helix 150	AQ6	C	417	427	Right-handed alpha
Helix 151	AQ7	C	431	446	Right-handed alpha
Helix 152	AQ8	C	447	461	Right-handed alpha
Helix 153	AQ9	C	468	494	Right-handed alpha
Helix 154	AR1	C	496	501	Right-handed 310
Helix 155	AR2	C	508	519	Right-handed alpha
Helix 156	AR3	C	527	531	Right-handed 310
Helix 157	AR4	C	532	538	Right-handed alpha
Helix 158	AR5	C	539	545	Right-handed 310
Helix 159	AR6	C	547	550	Right-handed 310
Helix 160	AR7	C	551	572	Right-handed alpha
Helix 161	AR8	C	581	598	Right-handed alpha
Helix 162	AR9	C	600	604	Right-handed 310
Helix 163	AS1	C	605	637	Right-handed alpha
Helix 164	AS2	C	648	658	Right-handed alpha
Helix 165	AS3	C	660	671	Right-handed alpha
Helix 166	AS4	C	680	701	Right-handed alpha
Helix 167	AS5	C	707	723	Right-handed alpha
Helix 168	AS6	C	724	726	Right-handed 310
Helix 169	AS7	C	729	743	Right-handed alpha
Helix 170	AS8	C	750	762	Right-handed alpha
Helix 171	AS9	C	768	786	Right-handed alpha
Helix 172	AT1	C	800	812	Right-handed alpha
Helix 173	AT2	C	818	826	Right-handed alpha
Helix 174	AT3	C	831	841	Right-handed alpha
Helix 175	AT4	C	842	845	Right-handed 310
Helix 176	AT5	C	846	857	Right-handed alpha
Helix 177	AT6	C	861	871	Right-handed alpha
Helix 178	AT7	C	878	903	Right-handed alpha
Helix 179	AT8	C	911	922	Right-handed alpha
Helix 180	AT9	C	927	933	Right-handed 310
Helix 181	AU1	C	937	945	Right-handed alpha
Helix 182	AU2	C	950	955	Right-handed 310
Helix 183	AU3	C	956	962	Right-handed alpha
Helix 184	AU4	C	963	971	Right-handed alpha
Helix 185	AU5	C	976	991	Right-handed alpha
Helix 186	AU6	C	993	1003	Right-handed alpha
Helix 187	AU7	D	10	19	Right-handed alpha
Helix 188	AU8	D	23	39	Right-handed alpha
Helix 189	AU9	D	48	53	Right-handed alpha
Helix 190	AV1	D	58	72	Right-handed alpha
Helix 191	AV2	D	82	96	Right-handed alpha
Helix 192	AV3	D	96	109	Right-handed alpha
Helix 193	AV4	D	115	124	Right-handed alpha
Helix 194	AV5	D	136	146	Right-handed alpha
Helix 195	AV6	D	155	159	Right-handed 310
Helix 196	AV7	D	186	192	Right-handed alpha
Helix 197	AV8	D	192	197	Right-handed alpha
Helix 198	AV9	D	197	210	Right-handed alpha
Helix 199	AW1	D	222	233	Right-handed alpha
Helix 200	AW2	D	254	265	Right-handed alpha
Helix 201	AW3	D	281	298	Right-handed alpha
Helix 202	AW4	D	304	317	Right-handed alpha
Helix 203	AW5	D	318	322	Right-handed 310
Helix 204	AW6	D	328	334	Right-handed alpha
Helix 205	AW7	D	355	366	Right-handed alpha
Helix 206	AW8	D	366	373	Right-handed alpha
Helix 207	AW9	D	374	392	Right-handed alpha
Helix 208	AX1	D	411	416	Right-handed alpha
Helix 209	AX2	D	417	427	Right-handed alpha
Helix 210	AX3	D	431	445	Right-handed alpha
Helix 211	AX4	D	447	466	Right-handed alpha
Helix 212	AX5	D	467	500	Right-handed alpha
Helix 213	AX6	D	508	519	Right-handed alpha
Helix 214	AX7	D	523	529	Right-handed 310
Helix 215	AX8	D	532	539	Right-handed alpha
Helix 216	AX9	D	540	546	Right-handed 310
Helix 217	AY1	D	551	557	Right-handed alpha
Helix 218	AY2	D	558	563	Right-handed 310
Helix 219	AY3	D	564	569	Right-handed alpha
Helix 220	AY4	D	579	598	Right-handed alpha
Helix 221	AY5	D	605	634	Right-handed alpha
Helix 222	AY6	D	648	659	Right-handed alpha
Helix 223	AY7	D	660	671	Right-handed alpha
Helix 224	AY8	D	672	676	Right-handed 310
Helix 225	AY9	D	680	701	Right-handed alpha
Helix 226	AZ1	D	705	723	Right-handed alpha
Helix 227	AZ2	D	729	744	Right-handed alpha
Helix 228	AZ3	D	750	763	Right-handed alpha
Helix 229	AZ4	D	768	786	Right-handed alpha
Helix 230	AZ5	D	800	812	Right-handed alpha
Helix 231	AZ6	D	817	826	Right-handed alpha
Helix 232	AZ7	D	831	841	Right-handed alpha
Helix 233	AZ8	D	842	845	Right-handed 310
Helix 234	AZ9	D	846	855	Right-handed alpha
Helix 235	BA1	D	861	871	Right-handed alpha
Helix 236	BA2	D	878	903	Right-handed alpha
Helix 237	BA3	D	911	922	Right-handed alpha
Helix 238	BA4	D	928	932	Right-handed 310
Helix 239	BA5	D	937	945	Right-handed alpha
Helix 240	BA6	D	950	954	Right-handed 310
Helix 241	BA7	D	955	960	Right-handed alpha
Helix 242	BA8	D	963	973	Right-handed alpha
Helix 243	BA9	D	973	991	Right-handed alpha
Helix 244	BB1	D	993	1003	Right-handed alpha
Helix 245	BB2	E	10	13	Right-handed 310
Helix 246	BB3	E	93	106	Right-handed alpha
Helix 247	BB4	F	9	13	Right-handed 310
Helix 248	BB5	F	94	106	Right-handed alpha

There are 14 sheets in PDB entry 8YL5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	166	169	parallel
Strand 3	A	128	131	parallel
Strand 4	A	43	46	parallel
Strand 5	A	213	216	parallel
Strand 6	A	244	247	parallel
Strand 7	A	267	270	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	340	first strand
Strand 2	A	345	348	anti-parallel
Strand 3	A	395	396	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	E	15	17	anti-parallel
Strand 3	E	22	24	anti-parallel
Strand 4	E	112	113	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	152	first strand
Strand 2	B	166	169	parallel
Strand 3	B	128	131	parallel
Strand 4	B	42	46	parallel
Strand 5	B	212	216	parallel
Strand 6	B	244	247	parallel
Strand 7	B	267	270	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	340	first strand
Strand 2	B	345	348	anti-parallel
Strand 3	B	395	396	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	166	169	parallel
Strand 3	C	128	131	parallel
Strand 4	C	43	46	parallel
Strand 5	C	213	216	parallel
Strand 6	C	244	247	parallel
Strand 7	C	267	270	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	345	348	anti-parallel
Strand 3	C	395	396	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	575	first strand
Strand 2	F	15	17	anti-parallel
Strand 3	F	22	24	anti-parallel
Strand 4	F	112	113	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	166	169	parallel
Strand 3	D	128	131	parallel
Strand 4	D	42	46	parallel
Strand 5	D	212	216	parallel
Strand 6	D	244	246	parallel
Strand 7	D	267	268	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	340	first strand
Strand 2	D	346	348	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	37	48	anti-parallel
Strand 4	E	27	33	anti-parallel
Strand 5	E	81	88	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	72	first strand
Strand 2	E	62	68	anti-parallel
Strand 3	E	37	48	anti-parallel
Strand 4	E	115	118	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	73	first strand
Strand 2	F	62	68	anti-parallel
Strand 3	F	37	48	anti-parallel
Strand 4	F	27	33	anti-parallel
Strand 5	F	82	88	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	73	first strand
Strand 2	F	62	68	anti-parallel
Strand 3	F	37	48	anti-parallel
Strand 4	F	115	118	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YL5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YL5