Analysis of interatomic Contacts of Structural Units in PDB entry:
8YL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YL9 entry

There are 3 chains in PDB entry 8YL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 352
B
 ASP 2ASP 338
I
 ASP 2MET 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8YL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 60Right-handed alpha
Helix 2
AA2
A
77 83Right-handed alpha
Helix 3
AA3
A
90 109Right-handed alpha
Helix 4
AA4
A
112 131Right-handed alpha
Helix 5
AA5
A
141 146Right-handed alpha
Helix 6
AA6
A
146 158Right-handed alpha
Helix 7
AA7
A
158 176Right-handed alpha
Helix 8
AA8
A
185 197Right-handed alpha
Helix 9
AA9
A
198 211Right-handed alpha
Helix 10
AB1
A
215 222Right-handed alpha
Helix 11
AB2
A
222 251Right-handed alpha
Helix 12
AB3
A
260 269Right-handed alpha
Helix 13
AB4
A
272 302Right-handed alpha
Helix 14
AB5
A
305 330Right-handed alpha
Helix 15
AB6
A
332 337Right-handed alpha
Helix 16
AB7
A
345 349Right-handed 310
Helix 17
AB8
B
15 19Right-handed 310
Helix 18
AB9
B
37 60Right-handed alpha
Helix 19
AC1
B
77 83Right-handed alpha
Helix 20
AC2
B
87 89Right-handed 310
Helix 21
AC3
B
90 107Right-handed alpha
Helix 22
AC4
B
112 129Right-handed alpha
Helix 23
AC5
B
141 146Right-handed alpha
Helix 24
AC6
B
146 158Right-handed alpha
Helix 25
AC7
B
158 177Right-handed alpha
Helix 26
AC8
B
185 195Right-handed alpha
Helix 27
AC9
B
198 210Right-handed alpha
Helix 28
AD1
B
215 221Right-handed alpha
Helix 29
AD2
B
222 253Right-handed alpha
Helix 30
AD3
B
260 270Right-handed alpha
Helix 31
AD4
B
272 301Right-handed alpha
Helix 32
AD5
B
305 330Right-handed alpha
Helix 33
AD6
B
332 337Right-handed alpha
Helix 34
AD7
I
15 19Right-handed 310
Helix 35
AD8
I
37 60Right-handed alpha
Helix 36
AD9
I
77 83Right-handed alpha
Helix 37
AE1
I
87 107Right-handed alpha
Helix 38
AE2
I
112 130Right-handed alpha
Helix 39
AE3
I
141 146Right-handed alpha
Helix 40
AE4
I
146 158Right-handed alpha
Helix 41
AE5
I
158 178Right-handed alpha
Helix 42
AE6
I
186 197Right-handed alpha
Helix 43
AE7
I
198 211Right-handed alpha
Helix 44
AE8
I
215 221Right-handed alpha
Helix 45
AE9
I
222 253Right-handed alpha
Helix 46
AF1
I
260 268Right-handed alpha
Helix 47
AF2
I
272 301Right-handed alpha
Helix 48
AF3
I
305 330Right-handed alpha
Helix 49
AF4
I
332 337Right-handed alpha
Helix 50
AF5
I
343 348Right-handed alpha
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There are 3 sheets in PDB entry 8YL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
33 35anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
32 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
11 13first strand
Strand 2
I
33 35anti-parallel
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