Analysis of interatomic Contacts of Structural Units in PDB entry:
8YLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YLE entry

There is 1 chain in PDB entry 8YLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9HIS 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8YLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
33 45Right-handed alpha
Helix 3
AA3
A
59 72Right-handed alpha
Helix 4
AA4
A
81 95Right-handed alpha
Helix 5
AA5
A
107 115Right-handed alpha
Helix 6
AA6
A
125 131Right-handed alpha
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
152 157Right-handed 310
Helix 9
AA9
A
164 169Right-handed alpha
Helix 10
AB1
A
172 177Right-handed alpha
Helix 11
AB2
A
190 202Right-handed alpha
Helix 12
AB3
A
228 234Right-handed alpha
Helix 13
AB4
A
256 270Right-handed alpha
Helix 14
AB5
A
282 295Right-handed alpha
Helix 15
AB6
A
308 312Right-handed 310
Helix 16
AB7
A
327 336Right-handed alpha
Helix 17
AB8
A
352 365Right-handed alpha
Helix 18
AB9
A
368 388Right-handed alpha
Helix 19
AC1
A
391 402Right-handed alpha
Helix 20
AC2
A
406 410Right-handed 310
Helix 21
AC3
A
419 428Right-handed alpha
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There are 3 sheets in PDB entry 8YLE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
121 124parallel
Strand 3
A
74 78parallel
Strand 4
A
145 150parallel
Strand 5
A
182 186parallel
Strand 6
A
50 53parallel
Strand 7
A
207 210parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 224first strand
Strand 2
A
345 351parallel
Strand 3
A
318 322parallel
Strand 4
A
250 253parallel
Strand 5
A
300 303parallel
Strand 6
A
274 277parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
244 246anti-parallel
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