Analysis of interatomic Contacts of Structural Units in PDB entry:
8YLN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YLN entry

There are 4 chains in PDB entry 8YLN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 304ILE 1005
B
 LYS 304ILE 1005
C
 THR 3SER 238
D
 THR 3SER 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 87 helices in PDB entry 8YLN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
304 317Right-handed alpha
Helix 2
AA2
A
318 320Right-handed 310
Helix 3
AA3
A
327 334Right-handed 310
Helix 4
AA4
A
357 366Right-handed alpha
Helix 5
AA5
A
366 373Right-handed alpha
Helix 6
AA6
A
374 392Right-handed alpha
Helix 7
AA7
A
396 400Right-handed 310
Helix 8
AA8
A
418 427Right-handed alpha
Helix 9
AA9
A
431 445Right-handed alpha
Helix 10
AB1
A
447 466Right-handed alpha
Helix 11
AB2
A
467 500Right-handed alpha
Helix 12
AB3
A
508 519Right-handed alpha
Helix 13
AB4
A
523 525Right-handed 310
Helix 14
AB5
A
526 531Right-handed alpha
Helix 15
AB6
A
532 539Right-handed alpha
Helix 16
AB7
A
541 546Right-handed 310
Helix 17
AB8
A
553 572Right-handed alpha
Helix 18
AB9
A
579 598Right-handed alpha
Helix 19
AC1
A
600 604Right-handed 310
Helix 20
AC2
A
605 629Right-handed alpha
Helix 21
AC3
A
632 639Right-handed alpha
Helix 22
AC4
A
648 659Right-handed alpha
Helix 23
AC5
A
660 671Right-handed alpha
Helix 24
AC6
A
672 676Right-handed 310
Helix 25
AC7
A
680 701Right-handed alpha
Helix 26
AC8
A
705 723Right-handed alpha
Helix 27
AC9
A
729 742Right-handed alpha
Helix 28
AD1
A
750 765Right-handed alpha
Helix 29
AD2
A
768 786Right-handed alpha
Helix 30
AD3
A
800 812Right-handed alpha
Helix 31
AD4
A
817 826Right-handed alpha
Helix 32
AD5
A
831 841Right-handed alpha
Helix 33
AD6
A
842 845Right-handed 310
Helix 34
AD7
A
846 857Right-handed alpha
Helix 35
AD8
A
861 871Right-handed alpha
Helix 36
AD9
A
878 900Right-handed alpha
Helix 37
AE1
A
908 922Right-handed alpha
Helix 38
AE2
A
928 934Right-handed 310
Helix 39
AE3
A
937 945Right-handed alpha
Helix 40
AE4
A
955 961Right-handed alpha
Helix 41
AE5
A
963 973Right-handed alpha
Helix 42
AE6
A
973 991Right-handed alpha
Helix 43
AE7
A
993 1003Right-handed alpha
Helix 44
AE8
B
305 317Right-handed alpha
Helix 45
AE9
B
318 321Right-handed 310
Helix 46
AF1
B
327 333Right-handed 310
Helix 47
AF2
B
355 366Right-handed alpha
Helix 48
AF3
B
366 372Right-handed alpha
Helix 49
AF4
B
374 392Right-handed alpha
Helix 50
AF5
B
417 427Right-handed alpha
Helix 51
AF6
B
431 445Right-handed alpha
Helix 52
AF7
B
447 466Right-handed alpha
Helix 53
AF8
B
467 494Right-handed alpha
Helix 54
AF9
B
494 501Right-handed alpha
Helix 55
AG1
B
508 519Right-handed alpha
Helix 56
AG2
B
523 525Right-handed 310
Helix 57
AG3
B
526 531Right-handed alpha
Helix 58
AG4
B
532 539Right-handed alpha
Helix 59
AG5
B
542 547Right-handed alpha
Helix 60
AG6
B
551 572Right-handed alpha
Helix 61
AG7
B
579 599Right-handed alpha
Helix 62
AG8
B
600 604Right-handed 310
Helix 63
AG9
B
605 628Right-handed alpha
Helix 64
AH1
B
634 639Right-handed alpha
Helix 65
AH2
B
648 659Right-handed alpha
Helix 66
AH3
B
660 671Right-handed alpha
Helix 67
AH4
B
672 676Right-handed 310
Helix 68
AH5
B
680 701Right-handed alpha
Helix 69
AH6
B
705 723Right-handed alpha
Helix 70
AH7
B
729 744Right-handed alpha
Helix 71
AH8
B
750 762Right-handed alpha
Helix 72
AH9
B
768 786Right-handed alpha
Helix 73
AI1
B
800 812Right-handed alpha
Helix 74
AI2
B
817 826Right-handed alpha
Helix 75
AI3
B
831 840Right-handed alpha
Helix 76
AI4
B
846 857Right-handed alpha
Helix 77
AI5
B
861 871Right-handed alpha
Helix 78
AI6
B
878 901Right-handed alpha
Helix 79
AI7
B
908 922Right-handed alpha
Helix 80
AI8
B
928 934Right-handed alpha
Helix 81
AI9
B
939 945Right-handed alpha
Helix 82
AJ1
B
955 960Right-handed 310
Helix 83
AJ2
B
963 972Right-handed alpha
Helix 84
AJ3
B
973 991Right-handed alpha
Helix 85
AJ4
B
993 1003Right-handed alpha
Helix 86
AJ5
C
69 76Right-handed alpha
Helix 87
AJ6
D
69 76Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8YLN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 340first strand
Strand 2
A
346 348anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
D
21 35anti-parallel
Strand 3
D
56 68anti-parallel
Strand 4
D
218 221anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 575first strand
Strand 2
D
21 35anti-parallel
Strand 3
D
10 15anti-parallel
Strand 4
D
171 178anti-parallel
Strand 5
D
190 198anti-parallel
Strand 6
D
233 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
346 347anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
646 647first strand
Strand 2
B
677 678parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 173first strand
Strand 2
C
10 15anti-parallel
Strand 3
C
21 34anti-parallel
Strand 4
C
57 68anti-parallel
Strand 5
C
219 221anti-parallel
Strand 6
C
199 200anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
176 177first strand
Strand 2
C
190 194anti-parallel
Strand 3
C
233 237anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il