Analysis of interatomic Contacts of Structural Units in PDB entry:
8YLU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YLU entry

There are 6 chains in PDB entry 8YLU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 441
B	MET 1	ILE 441
C	LYS 393	GLN 605
D	LYS 393	GLN 605
E	T 1	A 22
F	T 1	A 22

There are 53 helices in PDB entry 8YLU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	27	Right-handed alpha
Helix 2	AA2	A	37	51	Right-handed alpha
Helix 3	AA3	A	61	67	Right-handed alpha
Helix 4	AA4	A	68	72	Right-handed 310
Helix 5	AA5	A	76	86	Right-handed alpha
Helix 6	AA6	A	123	130	Right-handed alpha
Helix 7	AA7	A	132	136	Right-handed 310
Helix 8	AA8	A	156	161	Right-handed alpha
Helix 9	AA9	A	177	191	Right-handed alpha
Helix 10	AB1	A	239	247	Right-handed alpha
Helix 11	AB2	A	248	252	Right-handed 310
Helix 12	AB3	A	283	295	Right-handed alpha
Helix 13	AB4	A	319	365	Right-handed alpha
Helix 14	AB5	A	374	385	Right-handed alpha
Helix 15	AB6	A	399	403	Right-handed 310
Helix 16	AB7	A	404	426	Right-handed alpha
Helix 17	AB8	A	429	441	Right-handed alpha
Helix 18	AB9	B	8	27	Right-handed alpha
Helix 19	AC1	B	37	51	Right-handed alpha
Helix 20	AC2	B	61	67	Right-handed alpha
Helix 21	AC3	B	68	70	Right-handed 310
Helix 22	AC4	B	76	88	Right-handed alpha
Helix 23	AC5	B	123	130	Right-handed alpha
Helix 24	AC6	B	155	159	Right-handed 310
Helix 25	AC7	B	177	191	Right-handed alpha
Helix 26	AC8	B	239	247	Right-handed alpha
Helix 27	AC9	B	247	253	Right-handed alpha
Helix 28	AD1	B	283	295	Right-handed alpha
Helix 29	AD2	B	319	362	Right-handed alpha
Helix 30	AD3	B	374	385	Right-handed alpha
Helix 31	AD4	B	391	397	Right-handed alpha
Helix 32	AD5	B	404	426	Right-handed alpha
Helix 33	AD6	B	429	439	Right-handed alpha
Helix 34	AD7	C	422	427	Right-handed alpha
Helix 35	AD8	C	448	454	Right-handed alpha
Helix 36	AD9	C	455	465	Right-handed alpha
Helix 37	AE1	C	488	494	Right-handed alpha
Helix 38	AE2	C	494	504	Right-handed alpha
Helix 39	AE3	C	536	545	Right-handed alpha
Helix 40	AE4	C	557	561	Right-handed 310
Helix 41	AE5	C	562	572	Right-handed alpha
Helix 42	AE6	C	583	592	Right-handed alpha
Helix 43	AE7	C	597	604	Right-handed alpha
Helix 44	AE8	D	422	427	Right-handed alpha
Helix 45	AE9	D	448	453	Right-handed alpha
Helix 46	AF1	D	455	463	Right-handed alpha
Helix 47	AF2	D	488	504	Right-handed alpha
Helix 48	AF3	D	506	512	Right-handed alpha
Helix 49	AF4	D	536	545	Right-handed alpha
Helix 50	AF5	D	557	561	Right-handed 310
Helix 51	AF6	D	562	572	Right-handed alpha
Helix 52	AF7	D	583	593	Right-handed alpha
Helix 53	AF8	D	595	604	Right-handed alpha

There are 14 sheets in PDB entry 8YLU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	D	574	579	parallel
Strand 3	D	515	518	anti-parallel
Strand 4	D	480	484	parallel
Strand 5	D	410	414	parallel
Strand 6	D	432	436	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	98	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	170	173	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	211	first strand
Strand 2	A	214	218	anti-parallel
Strand 3	A	298	301	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	228	233	anti-parallel
Strand 3	A	270	274	anti-parallel
Strand 4	A	257	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	314	317	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	C	575	579	parallel
Strand 3	C	515	518	anti-parallel
Strand 4	C	480	483	parallel
Strand 5	C	410	414	parallel
Strand 6	C	432	436	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	170	173	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	298	301	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	270	274	anti-parallel
Strand 4	B	257	261	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	308	first strand
Strand 2	B	314	317	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	523	527	anti-parallel
Strand 3	C	552	554	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	534	first strand
Strand 2	D	523	527	anti-parallel
Strand 3	D	550	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YLU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YLU