Analysis of interatomic Contacts of Structural Units in PDB entry:
8YLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YLY entry

There is 1 chain in PDB entry 8YLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 6GLN 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8YLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 39Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
84 95Right-handed alpha
Helix 4
AA4
A
113 127Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
143 161Right-handed alpha
Helix 7
AA7
A
174 184Right-handed alpha
Helix 8
AA8
A
193 210Right-handed alpha
Helix 9
AA9
A
215 219Right-handed 310
Helix 10
AB1
A
293 297Right-handed 310
Helix 11
AB2
A
323 327Right-handed 310
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There are 6 sheets in PDB entry 8YLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
12 18parallel
Strand 4
A
102 107parallel
Strand 5
A
131 136parallel
Strand 6
A
170 172parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
61 64anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
235 244anti-parallel
Strand 3
A
222 224anti-parallel
Strand 4
A
302 304anti-parallel
Strand 5
A
252 256anti-parallel
Strand 6
A
262 271anti-parallel
Strand 7
A
274 276anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
235 244anti-parallel
Strand 3
A
284 290anti-parallel
Strand 4
A
262 271anti-parallel
Strand 5
A
274 276anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
278 280anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 321first strand
Strand 2
A
371 384anti-parallel
Strand 3
A
346 356anti-parallel
Strand 4
A
340 343anti-parallel
Strand 5
A
389 394anti-parallel
Strand 6
A
397 409anti-parallel
Strand 7
A
310 321anti-parallel
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