Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YMC entry

There are 4 chains in PDB entry 8YMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLU 222
B
 SER -1GLU 222
C
 PHE 52GLU 352
D
 PHE 52GLU 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8YMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 49Right-handed alpha
Helix 2
AA2
A
74 79Right-handed alpha
Helix 3
AA3
A
95 108Right-handed alpha
Helix 4
AA4
A
110 126Right-handed alpha
Helix 5
AA5
A
127 131Right-handed 310
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
139 151Right-handed alpha
Helix 8
AA8
A
169 187Right-handed alpha
Helix 9
AA9
A
196 202Right-handed alpha
Helix 10
AB1
B
40 50Right-handed alpha
Helix 11
AB2
B
74 79Right-handed alpha
Helix 12
AB3
B
95 108Right-handed alpha
Helix 13
AB4
B
110 126Right-handed alpha
Helix 14
AB5
B
127 131Right-handed 310
Helix 15
AB6
B
134 138Right-handed 310
Helix 16
AB7
B
139 151Right-handed alpha
Helix 17
AB8
B
169 187Right-handed alpha
Helix 18
AB9
B
196 202Right-handed alpha
Helix 19
AC1
C
53 70Right-handed alpha
Helix 20
AC2
C
70 106Right-handed alpha
Helix 21
AC3
C
120 133Right-handed alpha
Helix 22
AC4
C
144 157Right-handed alpha
Helix 23
AC5
C
158 165Right-handed 310
Helix 24
AC6
C
180 183Right-handed 310
Helix 25
AC7
C
184 197Right-handed alpha
Helix 26
AC8
C
208 250Right-handed alpha
Helix 27
AC9
C
251 261Right-handed alpha
Helix 28
AD1
C
264 310Right-handed alpha
Helix 29
AD2
C
319 350Right-handed alpha
Helix 30
AD3
D
53 70Right-handed alpha
Helix 31
AD4
D
70 106Right-handed alpha
Helix 32
AD5
D
120 133Right-handed alpha
Helix 33
AD6
D
144 157Right-handed alpha
Helix 34
AD7
D
158 162Right-handed 310
Helix 35
AD8
D
184 198Right-handed alpha
Helix 36
AD9
D
209 250Right-handed alpha
Helix 37
AE1
D
251 261Right-handed alpha
Helix 38
AE2
D
264 310Right-handed alpha
Helix 39
AE3
D
319 349Right-handed alpha
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There are 7 sheets in PDB entry 8YMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
24 25anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
2 10anti-parallel
Strand 3
A
56 61anti-parallel
Strand 4
A
64 65anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
158 162parallel
Strand 3
A
189 193parallel
Strand 4
A
30 35parallel
Strand 5
A
206 211parallel
Strand 6
A
214 216anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
2 8anti-parallel
Strand 3
B
56 61anti-parallel
Strand 4
B
64 65anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
158 162parallel
Strand 3
B
189 193parallel
Strand 4
B
30 35parallel
Strand 5
B
206 211parallel
Strand 6
B
214 216anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 143first strand
Strand 2
C
173 178anti-parallel
Strand 3
C
111 115anti-parallel
Strand 4
C
201 206anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
137 143first strand
Strand 2
D
173 178anti-parallel
Strand 3
D
113 115anti-parallel
Strand 4
D
201 204anti-parallel
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