Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YMK entry

There are 2 chains in PDB entry 8YMK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 226
B
 MET 1ILE 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8YMK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 28Right-handed alpha
Helix 2
AA2
A
28 36Right-handed alpha
Helix 3
AA3
A
37 44Right-handed alpha
Helix 4
AA4
A
73 101Right-handed alpha
Helix 5
AA5
A
158 169Right-handed alpha
Helix 6
AA6
A
175 184Right-handed alpha
Helix 7
AA7
A
186 202Right-handed alpha
Helix 8
AA8
A
203 213Right-handed alpha
Helix 9
AA9
A
214 226Right-handed alpha
Helix 10
AB1
B
2 44Right-handed alpha
Helix 11
AB2
B
74 102Right-handed alpha
Helix 12
AB3
B
157 170Right-handed alpha
Helix 13
AB4
B
171 185Right-handed alpha
Helix 14
AB5
B
187 199Right-handed alpha
Helix 15
AB6
B
201 213Right-handed alpha
Helix 16
AB7
B
215 226Right-handed alpha
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There are no sheets in PDB entry 8YMK
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il