Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YMM entry

There are 2 chains in PDB entry 8YMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 717
B
 ALA 2VAL 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 8YMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 31Right-handed alpha
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
39 45Right-handed alpha
Helix 4
AA4
A
69 73Right-handed 310
Helix 5
AA5
A
74 80Right-handed alpha
Helix 6
AA6
A
83 91Right-handed alpha
Helix 7
AA7
A
92 117Right-handed alpha
Helix 8
AA8
A
160 194Right-handed alpha
Helix 9
AA9
A
198 202Right-handed alpha
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
242 259Right-handed alpha
Helix 12
AB3
A
259 267Right-handed alpha
Helix 13
AB4
A
291 296Right-handed alpha
Helix 14
AB5
A
296 315Right-handed alpha
Helix 15
AB6
A
330 339Right-handed alpha
Helix 16
AB7
A
361 366Right-handed 310
Helix 17
AB8
A
368 389Right-handed alpha
Helix 18
AB9
A
390 407Right-handed alpha
Helix 19
AC1
A
433 441Right-handed alpha
Helix 20
AC2
A
441 454Right-handed alpha
Helix 21
AC3
A
457 477Right-handed alpha
Helix 22
AC4
A
477 483Right-handed alpha
Helix 23
AC5
A
487 496Right-handed alpha
Helix 24
AC6
A
500 510Right-handed alpha
Helix 25
AC7
A
513 525Right-handed alpha
Helix 26
AC8
A
526 535Right-handed alpha
Helix 27
AC9
A
535 547Right-handed alpha
Helix 28
AD1
A
566 588Right-handed alpha
Helix 29
AD2
A
590 613Right-handed alpha
Helix 30
AD3
A
624 650Right-handed alpha
Helix 31
AD4
A
655 660Right-handed alpha
Helix 32
AD5
A
660 677Right-handed alpha
Helix 33
AD6
A
678 683Right-handed alpha
Helix 34
AD7
A
685 700Right-handed alpha
Helix 35
AD8
A
704 711Right-handed alpha
Helix 36
AD9
A
712 714Right-handed 310
Helix 37
AE1
B
3 31Right-handed alpha
Helix 38
AE2
B
31 36Right-handed alpha
Helix 39
AE3
B
39 45Right-handed alpha
Helix 40
AE4
B
69 73Right-handed 310
Helix 41
AE5
B
74 80Right-handed alpha
Helix 42
AE6
B
83 91Right-handed alpha
Helix 43
AE7
B
92 117Right-handed alpha
Helix 44
AE8
B
160 194Right-handed alpha
Helix 45
AE9
B
198 202Right-handed alpha
Helix 46
AF1
B
216 228Right-handed alpha
Helix 47
AF2
B
242 259Right-handed alpha
Helix 48
AF3
B
259 267Right-handed alpha
Helix 49
AF4
B
291 296Right-handed alpha
Helix 50
AF5
B
296 315Right-handed alpha
Helix 51
AF6
B
330 339Right-handed alpha
Helix 52
AF7
B
361 366Right-handed 310
Helix 53
AF8
B
368 389Right-handed alpha
Helix 54
AF9
B
390 407Right-handed alpha
Helix 55
AG1
B
433 441Right-handed alpha
Helix 56
AG2
B
441 454Right-handed alpha
Helix 57
AG3
B
457 477Right-handed alpha
Helix 58
AG4
B
477 483Right-handed alpha
Helix 59
AG5
B
487 496Right-handed alpha
Helix 60
AG6
B
500 510Right-handed alpha
Helix 61
AG7
B
513 525Right-handed alpha
Helix 62
AG8
B
526 535Right-handed alpha
Helix 63
AG9
B
535 547Right-handed alpha
Helix 64
AH1
B
566 588Right-handed alpha
Helix 65
AH2
B
590 613Right-handed alpha
Helix 66
AH3
B
624 650Right-handed alpha
Helix 67
AH4
B
655 660Right-handed alpha
Helix 68
AH5
B
660 677Right-handed alpha
Helix 69
AH6
B
678 683Right-handed alpha
Helix 70
AH7
B
685 700Right-handed alpha
Helix 71
AH8
B
704 711Right-handed alpha
Helix 72
AH9
B
712 714Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 8YMM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
320 327anti-parallel
Strand 3
A
203 206anti-parallel
Strand 4
A
352 353anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
320 327anti-parallel
Strand 3
B
203 206anti-parallel
Strand 4
B
352 353anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il