Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YMO entry

There are 2 chains in PDB entry 8YMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 717
C
 ALA 2VAL 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8YMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 31Right-handed alpha
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
39 45Right-handed alpha
Helix 4
AA4
A
74 80Right-handed alpha
Helix 5
AA5
A
83 91Right-handed alpha
Helix 6
AA6
A
92 120Right-handed alpha
Helix 7
AA7
A
160 195Right-handed alpha
Helix 8
AA8
A
198 201Right-handed 310
Helix 9
AA9
A
216 228Right-handed alpha
Helix 10
AB1
A
242 259Right-handed alpha
Helix 11
AB2
A
259 267Right-handed alpha
Helix 12
AB3
A
291 315Right-handed alpha
Helix 13
AB4
A
330 339Right-handed alpha
Helix 14
AB5
A
361 367Right-handed 310
Helix 15
AB6
A
368 408Right-handed alpha
Helix 16
AB7
A
428 439Right-handed alpha
Helix 17
AB8
A
441 454Right-handed alpha
Helix 18
AB9
A
457 478Right-handed alpha
Helix 19
AC1
A
489 496Right-handed alpha
Helix 20
AC2
A
501 506Right-handed alpha
Helix 21
AC3
A
513 525Right-handed alpha
Helix 22
AC4
A
526 535Right-handed alpha
Helix 23
AC5
A
535 547Right-handed alpha
Helix 24
AC6
A
566 585Right-handed alpha
Helix 25
AC7
A
590 613Right-handed alpha
Helix 26
AC8
A
624 647Right-handed alpha
Helix 27
AC9
A
655 660Right-handed alpha
Helix 28
AD1
A
660 677Right-handed alpha
Helix 29
AD2
A
678 683Right-handed alpha
Helix 30
AD3
A
685 700Right-handed alpha
Helix 31
AD4
A
704 711Right-handed alpha
Helix 32
AD5
A
712 714Right-handed 310
Helix 33
AD6
C
3 31Right-handed alpha
Helix 34
AD7
C
34 38Right-handed 310
Helix 35
AD8
C
39 45Right-handed alpha
Helix 36
AD9
C
74 80Right-handed alpha
Helix 37
AE1
C
83 91Right-handed alpha
Helix 38
AE2
C
92 120Right-handed alpha
Helix 39
AE3
C
160 195Right-handed alpha
Helix 40
AE4
C
198 201Right-handed 310
Helix 41
AE5
C
216 228Right-handed alpha
Helix 42
AE6
C
242 259Right-handed alpha
Helix 43
AE7
C
259 267Right-handed alpha
Helix 44
AE8
C
291 315Right-handed alpha
Helix 45
AE9
C
330 339Right-handed alpha
Helix 46
AF1
C
361 367Right-handed 310
Helix 47
AF2
C
368 408Right-handed alpha
Helix 48
AF3
C
428 439Right-handed alpha
Helix 49
AF4
C
441 454Right-handed alpha
Helix 50
AF5
C
457 478Right-handed alpha
Helix 51
AF6
C
489 496Right-handed alpha
Helix 52
AF7
C
501 506Right-handed alpha
Helix 53
AF8
C
513 525Right-handed alpha
Helix 54
AF9
C
526 535Right-handed alpha
Helix 55
AG1
C
535 547Right-handed alpha
Helix 56
AG2
C
566 585Right-handed alpha
Helix 57
AG3
C
590 613Right-handed alpha
Helix 58
AG4
C
624 647Right-handed alpha
Helix 59
AG5
C
655 660Right-handed alpha
Helix 60
AG6
C
660 677Right-handed alpha
Helix 61
AG7
C
678 683Right-handed alpha
Helix 62
AG8
C
685 700Right-handed alpha
Helix 63
AG9
C
704 711Right-handed alpha
Helix 64
AH1
C
712 714Right-handed 310
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There are 2 sheets in PDB entry 8YMO. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 240first strand
Strand 2
A
320 328anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
350 353anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 240first strand
Strand 2
C
320 328anti-parallel
Strand 3
C
203 207anti-parallel
Strand 4
C
350 353anti-parallel
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