Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YMP entry

There are 2 chains in PDB entry 8YMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 68VAL 717
B
 SER 68VAL 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8YMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 81Right-handed alpha
Helix 2
AA2
A
84 91Right-handed alpha
Helix 3
AA3
A
92 107Right-handed alpha
Helix 4
AA4
A
110 116Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
160 194Right-handed alpha
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
216 228Right-handed alpha
Helix 9
AA9
A
242 265Right-handed alpha
Helix 10
AB1
A
291 296Right-handed alpha
Helix 11
AB2
A
296 315Right-handed alpha
Helix 12
AB3
A
330 339Right-handed alpha
Helix 13
AB4
A
356 360Right-handed 310
Helix 14
AB5
A
361 365Right-handed 310
Helix 15
AB6
A
368 408Right-handed alpha
Helix 16
AB7
A
423 433Right-handed alpha
Helix 17
AB8
A
434 454Right-handed alpha
Helix 18
AB9
A
457 478Right-handed alpha
Helix 19
AC1
A
481 498Right-handed alpha
Helix 20
AC2
A
513 523Right-handed alpha
Helix 21
AC3
A
523 535Right-handed alpha
Helix 22
AC4
A
536 549Right-handed alpha
Helix 23
AC5
A
569 585Right-handed alpha
Helix 24
AC6
A
590 613Right-handed alpha
Helix 25
AC7
A
624 647Right-handed alpha
Helix 26
AC8
A
655 677Right-handed alpha
Helix 27
AC9
A
678 683Right-handed alpha
Helix 28
AD1
A
685 700Right-handed alpha
Helix 29
AD2
A
705 711Right-handed alpha
Helix 30
AD3
B
69 81Right-handed alpha
Helix 31
AD4
B
84 91Right-handed alpha
Helix 32
AD5
B
92 107Right-handed alpha
Helix 33
AD6
B
110 116Right-handed alpha
Helix 34
AD7
B
120 124Right-handed 310
Helix 35
AD8
B
160 194Right-handed alpha
Helix 36
AD9
B
198 202Right-handed 310
Helix 37
AE1
B
216 228Right-handed alpha
Helix 38
AE2
B
242 265Right-handed alpha
Helix 39
AE3
B
291 296Right-handed alpha
Helix 40
AE4
B
296 315Right-handed alpha
Helix 41
AE5
B
330 339Right-handed alpha
Helix 42
AE6
B
356 360Right-handed 310
Helix 43
AE7
B
361 365Right-handed 310
Helix 44
AE8
B
368 408Right-handed alpha
Helix 45
AE9
B
423 433Right-handed alpha
Helix 46
AF1
B
434 454Right-handed alpha
Helix 47
AF2
B
457 478Right-handed alpha
Helix 48
AF3
B
481 498Right-handed alpha
Helix 49
AF4
B
513 523Right-handed alpha
Helix 50
AF5
B
523 535Right-handed alpha
Helix 51
AF6
B
536 549Right-handed alpha
Helix 52
AF7
B
569 585Right-handed alpha
Helix 53
AF8
B
590 613Right-handed alpha
Helix 54
AF9
B
624 647Right-handed alpha
Helix 55
AG1
B
655 677Right-handed alpha
Helix 56
AG2
B
678 683Right-handed alpha
Helix 57
AG3
B
685 700Right-handed alpha
Helix 58
AG4
B
705 711Right-handed alpha
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There are 6 sheets in PDB entry 8YMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
350 353anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
327 328anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
320 324anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
350 353anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
327 328anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
320 324anti-parallel
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