Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YMQ entry

There are 2 chains in PDB entry 8YMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2VAL 717
B
 ALA 2VAL 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8YMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 31Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
39 45Right-handed alpha
Helix 4
AA4
A
74 80Right-handed alpha
Helix 5
AA5
A
83 89Right-handed alpha
Helix 6
AA6
A
92 120Right-handed alpha
Helix 7
AA7
A
121 124Right-handed 310
Helix 8
AA8
A
160 195Right-handed alpha
Helix 9
AA9
A
198 201Right-handed 310
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
242 262Right-handed alpha
Helix 12
AB3
A
296 315Right-handed alpha
Helix 13
AB4
A
330 339Right-handed alpha
Helix 14
AB5
A
361 367Right-handed 310
Helix 15
AB6
A
368 408Right-handed alpha
Helix 16
AB7
A
421 440Right-handed alpha
Helix 17
AB8
A
441 454Right-handed alpha
Helix 18
AB9
A
457 476Right-handed alpha
Helix 19
AC1
A
513 525Right-handed alpha
Helix 20
AC2
A
526 534Right-handed alpha
Helix 21
AC3
A
535 548Right-handed alpha
Helix 22
AC4
A
566 585Right-handed alpha
Helix 23
AC5
A
591 613Right-handed alpha
Helix 24
AC6
A
624 647Right-handed alpha
Helix 25
AC7
A
654 677Right-handed alpha
Helix 26
AC8
A
678 683Right-handed alpha
Helix 27
AC9
A
685 700Right-handed alpha
Helix 28
AD1
A
704 711Right-handed alpha
Helix 29
AD2
B
3 31Right-handed alpha
Helix 30
AD3
B
34 39Right-handed alpha
Helix 31
AD4
B
39 45Right-handed alpha
Helix 32
AD5
B
74 80Right-handed alpha
Helix 33
AD6
B
83 89Right-handed alpha
Helix 34
AD7
B
92 120Right-handed alpha
Helix 35
AD8
B
121 124Right-handed 310
Helix 36
AD9
B
160 195Right-handed alpha
Helix 37
AE1
B
198 201Right-handed 310
Helix 38
AE2
B
216 228Right-handed alpha
Helix 39
AE3
B
242 262Right-handed alpha
Helix 40
AE4
B
296 315Right-handed alpha
Helix 41
AE5
B
330 339Right-handed alpha
Helix 42
AE6
B
361 367Right-handed 310
Helix 43
AE7
B
368 408Right-handed alpha
Helix 44
AE8
B
421 440Right-handed alpha
Helix 45
AE9
B
441 454Right-handed alpha
Helix 46
AF1
B
457 476Right-handed alpha
Helix 47
AF2
B
513 525Right-handed alpha
Helix 48
AF3
B
526 534Right-handed alpha
Helix 49
AF4
B
535 548Right-handed alpha
Helix 50
AF5
B
566 585Right-handed alpha
Helix 51
AF6
B
591 613Right-handed alpha
Helix 52
AF7
B
624 647Right-handed alpha
Helix 53
AF8
B
654 677Right-handed alpha
Helix 54
AF9
B
678 683Right-handed alpha
Helix 55
AG1
B
685 700Right-handed alpha
Helix 56
AG2
B
704 711Right-handed alpha
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There are 4 sheets in PDB entry 8YMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
320 328anti-parallel
Strand 3
A
238 240anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
320 328anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
350 353anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
320 328anti-parallel
Strand 3
B
238 240anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
320 328anti-parallel
Strand 3
B
203 207anti-parallel
Strand 4
B
350 353anti-parallel
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