Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YMT entry

There are 3 chains in PDB entry 8YMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 53	PHE 414
B	ARG 53	PHE 414
C	ARG 53	PHE 414

There are 32 helices in PDB entry 8YMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	83	Right-handed alpha
Helix 2	AA2	A	109	113	Right-handed 310
Helix 3	AA3	A	115	122	Right-handed alpha
Helix 4	AA4	A	129	136	Right-handed 310
Helix 5	AA5	A	140	147	Right-handed alpha
Helix 6	AA6	A	240	245	Right-handed alpha
Helix 7	AA7	A	275	296	Right-handed alpha
Helix 8	AA8	A	313	330	Right-handed alpha
Helix 9	AA9	A	330	335	Right-handed alpha
Helix 10	AB1	A	382	396	Right-handed alpha
Helix 11	AB2	A	401	413	Right-handed alpha
Helix 12	AB3	B	54	83	Right-handed alpha
Helix 13	AB4	B	109	113	Right-handed 310
Helix 14	AB5	B	115	122	Right-handed alpha
Helix 15	AB6	B	129	136	Right-handed 310
Helix 16	AB7	B	140	147	Right-handed alpha
Helix 17	AB8	B	240	245	Right-handed alpha
Helix 18	AB9	B	275	293	Right-handed alpha
Helix 19	AC1	B	313	330	Right-handed alpha
Helix 20	AC2	B	382	396	Right-handed alpha
Helix 21	AC3	B	401	413	Right-handed alpha
Helix 22	AC4	C	54	83	Right-handed alpha
Helix 23	AC5	C	109	113	Right-handed 310
Helix 24	AC6	C	115	122	Right-handed alpha
Helix 25	AC7	C	129	136	Right-handed 310
Helix 26	AC8	C	140	147	Right-handed alpha
Helix 27	AC9	C	240	245	Right-handed alpha
Helix 28	AD1	C	275	293	Right-handed alpha
Helix 29	AD2	C	313	330	Right-handed alpha
Helix 30	AD3	C	330	335	Right-handed alpha
Helix 31	AD4	C	382	396	Right-handed alpha
Helix 32	AD5	C	401	413	Right-handed alpha

There are 13 sheets in PDB entry 8YMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	94	first strand
Strand 2	A	371	379	anti-parallel
Strand 3	A	254	264	parallel
Strand 4	A	361	366	parallel
Strand 5	A	204	210	anti-parallel
Strand 6	A	155	163	anti-parallel
Strand 7	A	169	172	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	94	first strand
Strand 2	A	371	379	anti-parallel
Strand 3	A	254	264	parallel
Strand 4	A	344	350	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	186	191	anti-parallel
Strand 3	A	102	106	anti-parallel
Strand 4	A	223	229	anti-parallel
Strand 5	A	246	249	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	94	first strand
Strand 2	B	371	379	anti-parallel
Strand 3	B	255	264	parallel
Strand 4	B	361	366	parallel
Strand 5	B	204	210	anti-parallel
Strand 6	B	155	163	anti-parallel
Strand 7	B	169	172	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	94	first strand
Strand 2	B	371	379	anti-parallel
Strand 3	B	255	264	parallel
Strand 4	B	344	350	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	186	191	anti-parallel
Strand 3	B	102	106	anti-parallel
Strand 4	B	223	229	anti-parallel
Strand 5	B	246	249	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	94	first strand
Strand 2	C	371	379	anti-parallel
Strand 3	C	255	264	parallel
Strand 4	C	361	366	parallel
Strand 5	C	204	210	anti-parallel
Strand 6	C	155	161	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	94	first strand
Strand 2	C	371	379	anti-parallel
Strand 3	C	255	264	parallel
Strand 4	C	344	350	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	98	first strand
Strand 2	C	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	183	first strand
Strand 2	C	186	191	anti-parallel
Strand 3	C	102	105	anti-parallel
Strand 4	C	228	229	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	226	first strand
Strand 2	C	246	249	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YMT