Analysis of interatomic Contacts of Structural Units in PDB entry:
8YN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YN0 entry

There are 6 chains in PDB entry 8YN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	ASP 618
E	GLU 2	GLN 537
C	GLU 2	GLN 537
H	MET 1	PHE 415
A	ALA 2	ASP 618
D	ASN 2	PHE 415

There are162 helices in PDB entry 8YN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2	8	Right-handed alpha
Helix 2	AA2	B	11	27	Right-handed alpha
Helix 3	AA3	B	48	52	Right-handed 310
Helix 4	AA4	B	87	98	Right-handed alpha
Helix 5	AA5	B	102	113	Right-handed alpha
Helix 6	AA6	B	123	140	Right-handed alpha
Helix 7	AA7	B	146	149	Right-handed 310
Helix 8	AA8	B	164	173	Right-handed alpha
Helix 9	AA9	B	175	177	Right-handed 310
Helix 10	AB1	B	188	193	Right-handed alpha
Helix 11	AB2	B	196	201	Right-handed alpha
Helix 12	AB3	B	203	212	Right-handed alpha
Helix 13	AB4	B	221	247	Right-handed alpha
Helix 14	AB5	B	252	260	Right-handed alpha
Helix 15	AB6	B	286	297	Right-handed alpha
Helix 16	AB7	B	302	316	Right-handed alpha
Helix 17	AB8	B	319	326	Right-handed alpha
Helix 18	AB9	B	327	330	Right-handed 310
Helix 19	AC1	B	336	338	Right-handed 310
Helix 20	AC2	B	341	347	Right-handed alpha
Helix 21	AC3	B	351	381	Right-handed alpha
Helix 22	AC4	B	381	394	Right-handed alpha
Helix 23	AC5	B	394	402	Right-handed alpha
Helix 24	AC6	B	404	412	Right-handed alpha
Helix 25	AC7	B	415	441	Right-handed alpha
Helix 26	AC8	B	447	450	Right-handed 310
Helix 27	AC9	B	451	476	Right-handed alpha
Helix 28	AD1	B	478	483	Right-handed alpha
Helix 29	AD2	B	484	489	Right-handed alpha
Helix 30	AD3	B	491	507	Right-handed alpha
Helix 31	AD4	B	508	510	Right-handed 310
Helix 32	AD5	B	512	524	Right-handed alpha
Helix 33	AD6	B	529	537	Right-handed alpha
Helix 34	AD7	B	544	546	Right-handed 310
Helix 35	AD8	B	547	556	Right-handed alpha
Helix 36	AD9	B	559	562	Right-handed 310
Helix 37	AE1	B	563	580	Right-handed alpha
Helix 38	AE2	B	593	601	Right-handed alpha
Helix 39	AE3	B	603	610	Right-handed alpha
Helix 40	AE4	E	3	20	Right-handed alpha
Helix 41	AE5	E	20	34	Right-handed alpha
Helix 42	AE6	E	41	45	Right-handed 310
Helix 43	AE7	E	95	99	Right-handed 310
Helix 44	AE8	E	110	119	Right-handed alpha
Helix 45	AE9	E	123	136	Right-handed alpha
Helix 46	AF1	E	146	160	Right-handed alpha
Helix 47	AF2	E	182	190	Right-handed alpha
Helix 48	AF3	E	193	196	Right-handed 310
Helix 49	AF4	E	232	241	Right-handed alpha
Helix 50	AF5	E	250	261	Right-handed alpha
Helix 51	AF6	E	272	317	Right-handed alpha
Helix 52	AF7	E	320	331	Right-handed alpha
Helix 53	AF8	E	334	343	Right-handed alpha
Helix 54	AF9	E	343	360	Right-handed alpha
Helix 55	AG1	E	371	396	Right-handed alpha
Helix 56	AG2	E	400	405	Right-handed alpha
Helix 57	AG3	E	407	422	Right-handed alpha
Helix 58	AG4	E	443	461	Right-handed alpha
Helix 59	AG5	E	465	489	Right-handed alpha
Helix 60	AG6	E	493	498	Right-handed 310
Helix 61	AG7	E	501	514	Right-handed alpha
Helix 62	AG8	E	519	527	Right-handed alpha
Helix 63	AG9	E	528	533	Right-handed 310
Helix 64	AH1	C	3	20	Right-handed alpha
Helix 65	AH2	C	20	34	Right-handed alpha
Helix 66	AH3	C	95	99	Right-handed 310
Helix 67	AH4	C	110	121	Right-handed alpha
Helix 68	AH5	C	123	136	Right-handed alpha
Helix 69	AH6	C	146	159	Right-handed alpha
Helix 70	AH7	C	182	190	Right-handed alpha
Helix 71	AH8	C	193	196	Right-handed 310
Helix 72	AH9	C	232	241	Right-handed alpha
Helix 73	AI1	C	250	261	Right-handed alpha
Helix 74	AI2	C	272	317	Right-handed alpha
Helix 75	AI3	C	320	331	Right-handed alpha
Helix 76	AI4	C	334	343	Right-handed alpha
Helix 77	AI5	C	343	360	Right-handed alpha
Helix 78	AI6	C	371	396	Right-handed alpha
Helix 79	AI7	C	400	405	Right-handed alpha
Helix 80	AI8	C	407	423	Right-handed alpha
Helix 81	AI9	C	443	461	Right-handed alpha
Helix 82	AJ1	C	465	489	Right-handed alpha
Helix 83	AJ2	C	493	498	Right-handed 310
Helix 84	AJ3	C	501	514	Right-handed alpha
Helix 85	AJ4	C	519	527	Right-handed alpha
Helix 86	AJ5	C	528	533	Right-handed 310
Helix 87	AJ6	H	5	11	Right-handed alpha
Helix 88	AJ7	H	13	23	Right-handed alpha
Helix 89	AJ8	H	24	26	Right-handed 310
Helix 90	AJ9	H	34	46	Right-handed alpha
Helix 91	AK1	H	48	59	Right-handed alpha
Helix 92	AK2	H	71	75	Right-handed 310
Helix 93	AK3	H	85	99	Right-handed alpha
Helix 94	AK4	H	119	124	Right-handed 310
Helix 95	AK5	H	171	177	Right-handed 310
Helix 96	AK6	H	197	202	Right-handed 310
Helix 97	AK7	H	221	226	Right-handed 310
Helix 98	AK8	H	272	277	Right-handed alpha
Helix 99	AK9	H	296	302	Right-handed 310
Helix 100	AL1	H	320	326	Right-handed 310
Helix 101	AL2	H	346	350	Right-handed 310
Helix 102	AL3	H	367	373	Right-handed 310
Helix 103	AL4	H	381	392	Right-handed alpha
Helix 104	AL5	H	393	395	Right-handed 310
Helix 105	AL6	H	409	415	Right-handed 310
Helix 106	AL7	A	3	8	Right-handed alpha
Helix 107	AL8	A	10	27	Right-handed alpha
Helix 108	AL9	A	48	52	Right-handed 310
Helix 109	AM1	A	87	98	Right-handed alpha
Helix 110	AM2	A	102	114	Right-handed alpha
Helix 111	AM3	A	123	140	Right-handed alpha
Helix 112	AM4	A	146	150	Right-handed 310
Helix 113	AM5	A	164	173	Right-handed alpha
Helix 114	AM6	A	175	177	Right-handed 310
Helix 115	AM7	A	188	193	Right-handed alpha
Helix 116	AM8	A	196	201	Right-handed alpha
Helix 117	AM9	A	203	212	Right-handed alpha
Helix 118	AN1	A	221	247	Right-handed alpha
Helix 119	AN2	A	252	260	Right-handed alpha
Helix 120	AN3	A	286	297	Right-handed alpha
Helix 121	AN4	A	302	316	Right-handed alpha
Helix 122	AN5	A	319	325	Right-handed alpha
Helix 123	AN6	A	326	330	Right-handed 310
Helix 124	AN7	A	336	338	Right-handed 310
Helix 125	AN8	A	341	348	Right-handed alpha
Helix 126	AN9	A	351	381	Right-handed alpha
Helix 127	AO1	A	381	394	Right-handed alpha
Helix 128	AO2	A	394	402	Right-handed alpha
Helix 129	AO3	A	404	412	Right-handed alpha
Helix 130	AO4	A	415	441	Right-handed alpha
Helix 131	AO5	A	447	450	Right-handed 310
Helix 132	AO6	A	451	476	Right-handed alpha
Helix 133	AO7	A	478	483	Right-handed alpha
Helix 134	AO8	A	484	489	Right-handed alpha
Helix 135	AO9	A	491	507	Right-handed alpha
Helix 136	AP1	A	508	510	Right-handed 310
Helix 137	AP2	A	512	524	Right-handed alpha
Helix 138	AP3	A	530	537	Right-handed alpha
Helix 139	AP4	A	544	546	Right-handed 310
Helix 140	AP5	A	547	556	Right-handed alpha
Helix 141	AP6	A	559	581	Right-handed alpha
Helix 142	AP7	A	593	600	Right-handed alpha
Helix 143	AP8	A	603	609	Right-handed alpha
Helix 144	AP9	D	4	11	Right-handed alpha
Helix 145	AQ1	D	13	23	Right-handed alpha
Helix 146	AQ2	D	24	26	Right-handed 310
Helix 147	AQ3	D	34	43	Right-handed alpha
Helix 148	AQ4	D	48	59	Right-handed alpha
Helix 149	AQ5	D	71	75	Right-handed 310
Helix 150	AQ6	D	85	99	Right-handed alpha
Helix 151	AQ7	D	102	106	Right-handed 310
Helix 152	AQ8	D	119	123	Right-handed 310
Helix 153	AQ9	D	171	177	Right-handed 310
Helix 154	AR1	D	197	202	Right-handed 310
Helix 155	AR2	D	221	226	Right-handed 310
Helix 156	AR3	D	272	277	Right-handed alpha
Helix 157	AR4	D	296	302	Right-handed 310
Helix 158	AR5	D	320	326	Right-handed 310
Helix 159	AR6	D	346	350	Right-handed 310
Helix 160	AR7	D	367	373	Right-handed 310
Helix 161	AR8	D	381	392	Right-handed alpha
Helix 162	AR9	D	409	415	Right-handed 310

There are 16 sheets in PDB entry 8YN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	116	122	parallel
Strand 4	B	151	156	parallel
Strand 5	B	179	184	parallel
Strand 6	B	272	276	parallel
Strand 7	B	280	284	anti-parallel
Strand 8	B	331	334	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	84	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	163	first strand
Strand 2	B	267	268	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	61	first strand
Strand 2	E	66	71	anti-parallel
Strand 3	E	140	145	parallel
Strand 4	E	171	175	parallel
Strand 5	E	198	203	parallel
Strand 6	E	218	222	parallel
Strand 7	E	227	230	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	87	first strand
Strand 2	E	105	109	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	65	71	anti-parallel
Strand 3	C	140	145	parallel
Strand 4	C	171	175	parallel
Strand 5	C	198	203	parallel
Strand 6	C	218	222	parallel
Strand 7	C	227	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	105	109	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	33	first strand
Strand 2	H	80	83	anti-parallel
Strand 3	H	63	66	anti-parallel

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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	113	first strand
Strand 2	H	135	140	parallel
Strand 3	H	158	163	parallel
Strand 4	H	182	187	parallel
Strand 5	H	209	213	parallel
Strand 6	H	232	236	parallel
Strand 7	H	259	263	parallel
Strand 8	H	283	287	parallel
Strand 9	H	307	311	parallel
Strand 10	H	331	333	parallel
Strand 11	H	355	357	parallel
Strand 12	H	377	380	parallel
Strand 13	H	399	402	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	169	first strand
Strand 2	H	193	196	parallel
Strand 3	H	215	217	parallel
Strand 4	H	239	240	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	116	122	parallel
Strand 4	A	152	156	parallel
Strand 5	A	179	184	parallel
Strand 6	A	272	276	parallel
Strand 7	A	280	284	anti-parallel
Strand 8	A	331	334	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	84	86	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	267	268	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	80	83	anti-parallel
Strand 3	D	63	66	anti-parallel

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There are 13 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	113	first strand
Strand 2	D	135	140	parallel
Strand 3	D	158	163	parallel
Strand 4	D	182	187	parallel
Strand 5	D	209	213	parallel
Strand 6	D	232	236	parallel
Strand 7	D	259	263	parallel
Strand 8	D	283	287	parallel
Strand 9	D	307	311	parallel
Strand 10	D	331	333	parallel
Strand 11	D	355	357	parallel
Strand 12	D	377	380	parallel
Strand 13	D	399	402	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	169	first strand
Strand 2	D	193	196	parallel
Strand 3	D	215	217	parallel
Strand 4	D	239	240	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YN0