Analysis of interatomic Contacts of Structural Units in PDB entry:
8YN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YN1 entry

There are 3 chains in PDB entry 8YN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TYR 615
B
 SER 3LYS 535
C
 SER 404PHE 809
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 8YN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 8Right-handed alpha
Helix 2
AA2
A
10 24Right-handed alpha
Helix 3
AA3
A
87 98Right-handed alpha
Helix 4
AA4
A
99 102Right-handed 310
Helix 5
AA5
A
103 113Right-handed alpha
Helix 6
AA6
A
122 140Right-handed alpha
Helix 7
AA7
A
146 149Right-handed 310
Helix 8
AA8
A
163 173Right-handed alpha
Helix 9
AA9
A
188 195Right-handed 310
Helix 10
AB1
A
196 201Right-handed alpha
Helix 11
AB2
A
203 212Right-handed alpha
Helix 12
AB3
A
221 246Right-handed alpha
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
286 297Right-handed alpha
Helix 15
AB6
A
303 307Right-handed 310
Helix 16
AB7
A
308 317Right-handed alpha
Helix 17
AB8
A
319 326Right-handed alpha
Helix 18
AB9
A
340 348Right-handed alpha
Helix 19
AC1
A
351 381Right-handed alpha
Helix 20
AC2
A
381 394Right-handed alpha
Helix 21
AC3
A
394 402Right-handed alpha
Helix 22
AC4
A
405 413Right-handed alpha
Helix 23
AC5
A
415 441Right-handed alpha
Helix 24
AC6
A
447 450Right-handed 310
Helix 25
AC7
A
451 476Right-handed alpha
Helix 26
AC8
A
477 481Right-handed 310
Helix 27
AC9
A
484 489Right-handed alpha
Helix 28
AD1
A
491 507Right-handed alpha
Helix 29
AD2
A
547 556Right-handed alpha
Helix 30
AD3
A
559 581Right-handed alpha
Helix 31
AD4
A
593 600Right-handed alpha
Helix 32
AD5
A
603 608Right-handed alpha
Helix 33
AD6
B
4 20Right-handed alpha
Helix 34
AD7
B
20 34Right-handed alpha
Helix 35
AD8
B
110 136Right-handed alpha
Helix 36
AD9
B
145 160Right-handed alpha
Helix 37
AE1
B
183 189Right-handed alpha
Helix 38
AE2
B
192 196Right-handed 310
Helix 39
AE3
B
232 241Right-handed alpha
Helix 40
AE4
B
250 262Right-handed alpha
Helix 41
AE5
B
272 317Right-handed alpha
Helix 42
AE6
B
320 331Right-handed alpha
Helix 43
AE7
B
334 360Right-handed alpha
Helix 44
AE8
B
372 396Right-handed alpha
Helix 45
AE9
B
400 405Right-handed alpha
Helix 46
AF1
B
407 422Right-handed alpha
Helix 47
AF2
B
443 461Right-handed alpha
Helix 48
AF3
B
466 489Right-handed alpha
Helix 49
AF4
B
493 498Right-handed 310
Helix 50
AF5
B
501 515Right-handed alpha
Helix 51
AF6
B
519 527Right-handed alpha
Helix 52
AF7
B
529 533Right-handed 310
Helix 53
AF8
C
409 418Right-handed alpha
Helix 54
AF9
C
419 422Right-handed 310
Helix 55
AG1
C
430 442Right-handed alpha
Helix 56
AG2
C
444 458Right-handed alpha
Helix 57
AG3
C
484 494Right-handed alpha
Helix 58
AG4
C
499 503Right-handed 310
Helix 59
AG5
C
563 569Right-handed 310
Helix 60
AG6
C
590 596Right-handed 310
Helix 61
AG7
C
612 617Right-handed alpha
Helix 62
AG8
C
643 648Right-handed alpha
Helix 63
AG9
C
667 672Right-handed 310
Helix 64
AH1
C
692 696Right-handed 310
Helix 65
AH2
C
714 720Right-handed 310
Helix 66
AH3
C
740 744Right-handed 310
Helix 67
AH4
C
761 767Right-handed 310
Helix 68
AH5
C
775 784Right-handed alpha
Helix 69
AH6
C
785 789Right-handed 310
Helix 70
AH7
C
803 808Right-handed 310
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There are 9 sheets in PDB entry 8YN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
116 121parallel
Strand 4
A
151 156parallel
Strand 5
A
179 184parallel
Strand 6
A
272 276parallel
Strand 7
A
280 284anti-parallel
Strand 8
A
331 334parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
84 86anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
66 71anti-parallel
Strand 3
B
140 144parallel
Strand 4
B
171 175parallel
Strand 5
B
198 203parallel
Strand 6
B
218 222parallel
Strand 7
B
227 230anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 87first strand
Strand 2
B
105 109anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
213 214anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
428 429first strand
Strand 2
C
479 482anti-parallel
Strand 3
C
462 465anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
505 509first strand
Strand 2
C
527 531parallel
Strand 3
C
550 555parallel
Strand 4
C
574 579parallel
Strand 5
C
601 605parallel
Strand 6
C
624 628parallel
Strand 7
C
653 657parallel
Strand 8
C
679 681parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
559 561first strand
Strand 2
C
585 588parallel
Strand 3
C
607 608parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
749 751first strand
Strand 2
C
771 774parallel
Strand 3
C
793 796parallel
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