Analysis of interatomic Contacts of Structural Units in PDB entry:
8YN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YN4 entry

There are 5 chains in PDB entry 8YN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5VAL 359
B
 SER 2SER 343
C
 THR 6ARG 62
E
 ASP 1LEU 247
R
 THR 15LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8YN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 29Right-handed alpha
Helix 2
AA2
A
45 54Right-handed alpha
Helix 3
AA3
A
95 101Right-handed 310
Helix 4
AA4
A
117 130Right-handed alpha
Helix 5
AA5
A
145 156Right-handed alpha
Helix 6
AA6
A
159 164Right-handed alpha
Helix 7
AA7
A
165 168Right-handed 310
Helix 8
AA8
A
183 204Right-handed alpha
Helix 9
AA9
A
222 356Right-handed alpha
Helix 10
AB1
B
3 25Right-handed alpha
Helix 11
AB2
B
29 34Right-handed alpha
Helix 12
AB3
C
7 24Right-handed alpha
Helix 13
AB4
C
29 44Right-handed alpha
Helix 14
AB5
C
55 59Right-handed 310
Helix 15
AB6
E
28 32Right-handed 310
Helix 16
AB7
E
87 91Right-handed 310
Helix 17
AB8
R
16 46Right-handed alpha
Helix 18
AB9
R
51 53Right-handed 310
Helix 19
AC1
R
54 71Right-handed alpha
Helix 20
AC2
R
71 82Right-handed alpha
Helix 21
AC3
R
87 122Right-handed alpha
Helix 22
AC4
R
125 130Right-handed alpha
Helix 23
AC5
R
131 156Right-handed alpha
Helix 24
AC6
R
179 191Right-handed alpha
Helix 25
AC7
R
191 216Right-handed alpha
Helix 26
AC8
R
230 261Right-handed alpha
Helix 27
AC9
R
266 288Right-handed alpha
Helix 28
AD1
R
292 301Right-handed alpha
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There are 14 sheets in PDB entry 8YN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
33 39parallel
Strand 4
A
105 111parallel
Strand 5
A
138 139parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
80 85anti-parallel
Strand 3
A
33 39parallel
Strand 4
A
105 111parallel
Strand 5
A
142 144parallel
Strand 6
A
214 215parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
175 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
207 212anti-parallel
Strand 4
B
218 223anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
249 254anti-parallel
Strand 4
B
259 265anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
18 25anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
45 51anti-parallel
Strand 6
E
58 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
110 111anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 141first strand
Strand 2
E
155 161anti-parallel
Strand 3
E
211 216anti-parallel
Strand 4
E
203 208anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 148first strand
Strand 2
E
243 246parallel
Strand 3
E
226 231anti-parallel
Strand 4
E
174 179anti-parallel
Strand 5
E
186 190anti-parallel
Strand 6
E
194 195anti-parallel
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