Analysis of interatomic Contacts of Structural Units in PDB entry:
8YND

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YND entry

There are 8 chains in PDB entry 8YND (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 440
B	PRO 2	SER 440
C	MET 1	SER 440
D	MET 1	SER 440
E	PRO 2	SER 440
F	MET 1	SER 440
G	PRO 2	SER 440
H	PRO 2	SER 440

There are131 helices in PDB entry 8YND. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	41	Right-handed 310
Helix 2	AA2	A	56	66	Right-handed alpha
Helix 3	AA3	A	68	72	Right-handed 310
Helix 4	AA4	A	82	88	Right-handed alpha
Helix 5	AA5	A	88	100	Right-handed alpha
Helix 6	AA6	A	113	123	Right-handed alpha
Helix 7	AA7	A	130	136	Right-handed alpha
Helix 8	AA8	A	137	143	Right-handed alpha
Helix 9	AA9	A	144	156	Right-handed alpha
Helix 10	AB1	A	167	179	Right-handed alpha
Helix 11	AB2	A	222	235	Right-handed alpha
Helix 12	AB3	A	299	317	Right-handed alpha
Helix 13	AB4	A	346	358	Right-handed alpha
Helix 14	AB5	A	377	388	Right-handed alpha
Helix 15	AB6	A	421	437	Right-handed alpha
Helix 16	AB7	B	32	41	Right-handed 310
Helix 17	AB8	B	56	66	Right-handed alpha
Helix 18	AB9	B	82	87	Right-handed alpha
Helix 19	AC1	B	88	100	Right-handed alpha
Helix 20	AC2	B	113	123	Right-handed alpha
Helix 21	AC3	B	130	136	Right-handed alpha
Helix 22	AC4	B	137	143	Right-handed alpha
Helix 23	AC5	B	144	156	Right-handed alpha
Helix 24	AC6	B	167	179	Right-handed alpha
Helix 25	AC7	B	219	221	Right-handed 310
Helix 26	AC8	B	222	235	Right-handed alpha
Helix 27	AC9	B	299	317	Right-handed alpha
Helix 28	AD1	B	346	358	Right-handed alpha
Helix 29	AD2	B	360	364	Right-handed 310
Helix 30	AD3	B	377	388	Right-handed alpha
Helix 31	AD4	B	421	437	Right-handed alpha
Helix 32	AD5	C	32	41	Right-handed 310
Helix 33	AD6	C	56	66	Right-handed alpha
Helix 34	AD7	C	82	88	Right-handed alpha
Helix 35	AD8	C	88	100	Right-handed alpha
Helix 36	AD9	C	113	124	Right-handed alpha
Helix 37	AE1	C	130	136	Right-handed alpha
Helix 38	AE2	C	137	143	Right-handed alpha
Helix 39	AE3	C	144	155	Right-handed alpha
Helix 40	AE4	C	167	179	Right-handed alpha
Helix 41	AE5	C	222	235	Right-handed alpha
Helix 42	AE6	C	299	317	Right-handed alpha
Helix 43	AE7	C	346	358	Right-handed alpha
Helix 44	AE8	C	360	364	Right-handed 310
Helix 45	AE9	C	377	388	Right-handed alpha
Helix 46	AF1	C	421	437	Right-handed alpha
Helix 47	AF2	D	34	41	Right-handed 310
Helix 48	AF3	D	56	66	Right-handed alpha
Helix 49	AF4	D	68	72	Right-handed 310
Helix 50	AF5	D	82	87	Right-handed alpha
Helix 51	AF6	D	88	100	Right-handed alpha
Helix 52	AF7	D	113	124	Right-handed alpha
Helix 53	AF8	D	130	136	Right-handed alpha
Helix 54	AF9	D	137	143	Right-handed alpha
Helix 55	AG1	D	144	156	Right-handed alpha
Helix 56	AG2	D	167	179	Right-handed alpha
Helix 57	AG3	D	219	221	Right-handed 310
Helix 58	AG4	D	222	235	Right-handed alpha
Helix 59	AG5	D	299	317	Right-handed alpha
Helix 60	AG6	D	346	358	Right-handed alpha
Helix 61	AG7	D	360	364	Right-handed 310
Helix 62	AG8	D	377	389	Right-handed alpha
Helix 63	AG9	D	421	437	Right-handed alpha
Helix 64	AH1	E	8	12	Right-handed 310
Helix 65	AH2	E	34	41	Right-handed 310
Helix 66	AH3	E	56	66	Right-handed alpha
Helix 67	AH4	E	68	72	Right-handed 310
Helix 68	AH5	E	82	88	Right-handed alpha
Helix 69	AH6	E	88	100	Right-handed alpha
Helix 70	AH7	E	113	123	Right-handed alpha
Helix 71	AH8	E	130	136	Right-handed alpha
Helix 72	AH9	E	137	143	Right-handed alpha
Helix 73	AI1	E	144	156	Right-handed alpha
Helix 74	AI2	E	167	179	Right-handed alpha
Helix 75	AI3	E	222	235	Right-handed alpha
Helix 76	AI4	E	299	317	Right-handed alpha
Helix 77	AI5	E	346	358	Right-handed alpha
Helix 78	AI6	E	360	364	Right-handed 310
Helix 79	AI7	E	377	388	Right-handed alpha
Helix 80	AI8	E	421	437	Right-handed alpha
Helix 81	AI9	F	32	41	Right-handed 310
Helix 82	AJ1	F	56	66	Right-handed alpha
Helix 83	AJ2	F	68	72	Right-handed 310
Helix 84	AJ3	F	82	88	Right-handed alpha
Helix 85	AJ4	F	88	100	Right-handed alpha
Helix 86	AJ5	F	113	123	Right-handed alpha
Helix 87	AJ6	F	130	136	Right-handed alpha
Helix 88	AJ7	F	137	142	Right-handed alpha
Helix 89	AJ8	F	144	156	Right-handed alpha
Helix 90	AJ9	F	167	180	Right-handed alpha
Helix 91	AK1	F	219	221	Right-handed 310
Helix 92	AK2	F	222	235	Right-handed alpha
Helix 93	AK3	F	299	317	Right-handed alpha
Helix 94	AK4	F	346	358	Right-handed alpha
Helix 95	AK5	F	360	364	Right-handed 310
Helix 96	AK6	F	377	388	Right-handed alpha
Helix 97	AK7	F	421	437	Right-handed alpha
Helix 98	AK8	G	32	41	Right-handed 310
Helix 99	AK9	G	56	66	Right-handed alpha
Helix 100	AL1	G	68	72	Right-handed 310
Helix 101	AL2	G	82	88	Right-handed alpha
Helix 102	AL3	G	88	100	Right-handed alpha
Helix 103	AL4	G	113	124	Right-handed alpha
Helix 104	AL5	G	130	136	Right-handed alpha
Helix 105	AL6	G	137	143	Right-handed alpha
Helix 106	AL7	G	144	156	Right-handed alpha
Helix 107	AL8	G	167	180	Right-handed alpha
Helix 108	AL9	G	219	221	Right-handed 310
Helix 109	AM1	G	222	235	Right-handed alpha
Helix 110	AM2	G	299	317	Right-handed alpha
Helix 111	AM3	G	346	358	Right-handed alpha
Helix 112	AM4	G	360	364	Right-handed 310
Helix 113	AM5	G	377	389	Right-handed alpha
Helix 114	AM6	G	421	437	Right-handed alpha
Helix 115	AM7	H	34	41	Right-handed 310
Helix 116	AM8	H	56	66	Right-handed alpha
Helix 117	AM9	H	68	72	Right-handed 310
Helix 118	AN1	H	82	88	Right-handed alpha
Helix 119	AN2	H	88	100	Right-handed alpha
Helix 120	AN3	H	113	124	Right-handed alpha
Helix 121	AN4	H	130	136	Right-handed alpha
Helix 122	AN5	H	137	143	Right-handed alpha
Helix 123	AN6	H	144	156	Right-handed alpha
Helix 124	AN7	H	167	179	Right-handed alpha
Helix 125	AN8	H	219	221	Right-handed 310
Helix 126	AN9	H	222	235	Right-handed alpha
Helix 127	AO1	H	299	317	Right-handed alpha
Helix 128	AO2	H	346	358	Right-handed alpha
Helix 129	AO3	H	360	365	Right-handed alpha
Helix 130	AO4	H	377	388	Right-handed alpha
Helix 131	AO5	H	421	437	Right-handed alpha

There are 30 sheets in PDB entry 8YND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	46	49	parallel
Strand 3	A	3	6	parallel
Strand 4	A	106	109	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	184	189	anti-parallel
Strand 4	A	198	202	anti-parallel
Strand 5	A	214	217	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	271	first strand
Strand 2	A	252	260	anti-parallel
Strand 3	A	320	328	anti-parallel
Strand 4	A	334	340	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	288	291	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	373	first strand
Strand 2	A	412	419	anti-parallel
Strand 3	A	399	407	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	46	49	parallel
Strand 3	B	3	6	parallel
Strand 4	B	106	109	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	184	189	anti-parallel
Strand 4	B	198	202	anti-parallel
Strand 5	B	215	217	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	340	first strand
Strand 2	B	320	328	anti-parallel
Strand 3	B	252	260	anti-parallel
Strand 4	B	265	275	anti-parallel
Strand 5	B	288	293	anti-parallel
Strand 6	B	366	373	anti-parallel
Strand 7	B	412	419	anti-parallel
Strand 8	B	399	407	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	76	first strand
Strand 2	C	46	49	parallel
Strand 3	C	3	6	parallel
Strand 4	C	106	109	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	184	189	anti-parallel
Strand 4	C	198	202	anti-parallel
Strand 5	C	215	217	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	340	first strand
Strand 2	C	320	328	anti-parallel
Strand 3	C	252	260	anti-parallel
Strand 4	C	265	275	anti-parallel
Strand 5	C	288	293	anti-parallel
Strand 6	C	366	373	anti-parallel
Strand 7	C	412	419	anti-parallel
Strand 8	C	399	407	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	76	first strand
Strand 2	D	46	49	parallel
Strand 3	D	3	6	parallel
Strand 4	D	106	109	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	184	189	anti-parallel
Strand 4	D	198	202	anti-parallel
Strand 5	D	214	217	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	341	first strand
Strand 2	D	320	328	anti-parallel
Strand 3	D	252	260	anti-parallel
Strand 4	D	265	275	anti-parallel
Strand 5	D	288	293	anti-parallel
Strand 6	D	366	373	anti-parallel
Strand 7	D	413	419	anti-parallel
Strand 8	D	399	404	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	76	first strand
Strand 2	E	46	49	parallel
Strand 3	E	3	6	parallel
Strand 4	E	106	109	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	242	246	anti-parallel
Strand 3	E	184	189	anti-parallel
Strand 4	E	198	202	anti-parallel
Strand 5	E	214	217	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	292	first strand
Strand 2	E	265	275	anti-parallel
Strand 3	E	254	260	anti-parallel
Strand 4	E	320	328	anti-parallel
Strand 5	E	334	340	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	366	373	first strand
Strand 2	E	412	419	anti-parallel
Strand 3	E	399	407	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	76	first strand
Strand 2	F	46	49	parallel
Strand 3	F	3	6	parallel
Strand 4	F	106	109	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	242	246	anti-parallel
Strand 3	F	184	189	anti-parallel
Strand 4	F	198	202	anti-parallel
Strand 5	F	214	217	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	287	291	first strand
Strand 2	F	265	276	anti-parallel
Strand 3	F	252	260	anti-parallel
Strand 4	F	320	328	anti-parallel
Strand 5	F	334	340	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	366	373	first strand
Strand 2	F	412	419	anti-parallel
Strand 3	F	399	407	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	76	first strand
Strand 2	G	46	49	parallel
Strand 3	G	3	6	parallel
Strand 4	G	106	109	parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	242	246	anti-parallel
Strand 3	G	184	189	anti-parallel
Strand 4	G	198	202	anti-parallel
Strand 5	G	214	217	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	265	271	first strand
Strand 2	G	252	260	anti-parallel
Strand 3	G	320	328	anti-parallel
Strand 4	G	334	340	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	273	274	first strand
Strand 2	G	290	291	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	366	373	first strand
Strand 2	G	412	419	anti-parallel
Strand 3	G	399	407	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	76	first strand
Strand 2	H	46	49	parallel
Strand 3	H	3	6	parallel
Strand 4	H	106	109	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	165	first strand
Strand 2	H	242	246	anti-parallel
Strand 3	H	184	189	anti-parallel
Strand 4	H	198	202	anti-parallel
Strand 5	H	214	217	parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	334	341	first strand
Strand 2	H	320	328	anti-parallel
Strand 3	H	252	260	anti-parallel
Strand 4	H	265	275	anti-parallel
Strand 5	H	288	293	anti-parallel
Strand 6	H	366	373	anti-parallel
Strand 7	H	412	419	anti-parallel
Strand 8	H	399	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YND

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YND