Analysis of interatomic Contacts of Structural Units in PDB entry:
8YNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YNF entry

There are 6 chains in PDB entry 8YNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 46ALA 311
D
 PRO 16ARG 68
E
 LEU 5SER 72
A
 GLU 46ALA 311
G
 LEU 5SER 72
H
 PRO 16ARG 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 8YNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
65 82Right-handed alpha
Helix 2
AA2
B
95 117Right-handed alpha
Helix 3
AA3
B
125 153Right-handed alpha
Helix 4
AA4
B
163 181Right-handed alpha
Helix 5
AA5
B
181 187Right-handed alpha
Helix 6
AA6
B
200 202Right-handed 310
Helix 7
AA7
B
203 219Right-handed alpha
Helix 8
AA8
B
219 227Right-handed alpha
Helix 9
AA9
B
246 268Right-handed alpha
Helix 10
AB1
B
275 295Right-handed alpha
Helix 11
AB2
B
295 311Right-handed alpha
Helix 12
AB3
D
61 68Right-handed alpha
Helix 13
AB4
E
63 68Right-handed alpha
Helix 14
AB5
A
65 81Right-handed alpha
Helix 15
AB6
A
95 117Right-handed alpha
Helix 16
AB7
A
125 153Right-handed alpha
Helix 17
AB8
A
163 181Right-handed alpha
Helix 18
AB9
A
181 187Right-handed alpha
Helix 19
AC1
A
200 202Right-handed 310
Helix 20
AC2
A
203 227Right-handed alpha
Helix 21
AC3
A
246 268Right-handed alpha
Helix 22
AC4
A
275 295Right-handed alpha
Helix 23
AC5
A
295 311Right-handed alpha
Helix 24
AC6
G
63 68Right-handed alpha
Helix 25
AC7
H
58 68Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8YNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
194 197anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 51first strand
Strand 2
D
39 42anti-parallel
Strand 3
D
24 28anti-parallel
Strand 4
E
24 27anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
194 197anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
38 38first strand
Strand 2
G
24 28anti-parallel
Strand 3
G
41 42anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
38 38first strand
Strand 2
G
24 28anti-parallel
Strand 3
H
24 28anti-parallel
Strand 4
H
39 42anti-parallel
Strand 5
H
49 51anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il