Analysis of interatomic Contacts of Structural Units in PDB entry:
8YNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YNM entry

There are 11 chains in PDB entry 8YNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 MET 1VAL 175
A
 MET 1SER 182
B
 MET 1SER 182
C
 MET 1SER 182
H
 SER 2VAL 175
I
 MET 1GLN 176
J
 MET 1VAL 175
K
 MET 1VAL 175
G
 MET 1VAL 175
F
 MET 1VAL 175
N
 MET 1VAL 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 8YNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
1 13Right-handed alpha
Helix 2
AA2
O
14 25Right-handed alpha
Helix 3
AA3
O
36 48Right-handed alpha
Helix 4
AA4
O
51 63Right-handed alpha
Helix 5
AA5
O
64 73Right-handed alpha
Helix 6
AA6
O
91 104Right-handed alpha
Helix 7
AA7
O
105 116Right-handed alpha
Helix 8
AA8
O
122 126Right-handed 310
Helix 9
AA9
O
130 141Right-handed alpha
Helix 10
AB1
O
149 159Right-handed alpha
Helix 11
AB2
O
161 175Right-handed alpha
Helix 12
AB3
A
2 13Right-handed alpha
Helix 13
AB4
A
15 26Right-handed alpha
Helix 14
AB5
A
31 36Right-handed alpha
Helix 15
AB6
A
40 51Right-handed alpha
Helix 16
AB7
A
59 69Right-handed alpha
Helix 17
AB8
A
71 78Right-handed alpha
Helix 18
AB9
A
82 92Right-handed alpha
Helix 19
AC1
A
99 111Right-handed alpha
Helix 20
AC2
A
113 123Right-handed alpha
Helix 21
AC3
A
129 133Right-handed 310
Helix 22
AC4
A
138 149Right-handed alpha
Helix 23
AC5
A
157 168Right-handed alpha
Helix 24
AC6
A
169 182Right-handed alpha
Helix 25
AC7
B
2 12Right-handed alpha
Helix 26
AC8
B
15 26Right-handed alpha
Helix 27
AC9
B
31 36Right-handed alpha
Helix 28
AD1
B
40 51Right-handed alpha
Helix 29
AD2
B
59 69Right-handed alpha
Helix 30
AD3
B
71 79Right-handed alpha
Helix 31
AD4
B
82 92Right-handed alpha
Helix 32
AD5
B
99 110Right-handed alpha
Helix 33
AD6
B
113 124Right-handed alpha
Helix 34
AD7
B
129 133Right-handed 310
Helix 35
AD8
B
138 149Right-handed alpha
Helix 36
AD9
B
157 165Right-handed alpha
Helix 37
AE1
B
169 182Right-handed alpha
Helix 38
AE2
C
2 14Right-handed alpha
Helix 39
AE3
C
15 26Right-handed alpha
Helix 40
AE4
C
31 36Right-handed alpha
Helix 41
AE5
C
40 51Right-handed alpha
Helix 42
AE6
C
59 69Right-handed alpha
Helix 43
AE7
C
71 79Right-handed alpha
Helix 44
AE8
C
82 92Right-handed alpha
Helix 45
AE9
C
99 110Right-handed alpha
Helix 46
AF1
C
113 124Right-handed alpha
Helix 47
AF2
C
138 149Right-handed alpha
Helix 48
AF3
C
157 166Right-handed alpha
Helix 49
AF4
C
169 182Right-handed alpha
Helix 50
AF5
H
3 11Right-handed alpha
Helix 51
AF6
H
14 26Right-handed alpha
Helix 52
AF7
H
36 47Right-handed alpha
Helix 53
AF8
H
51 61Right-handed alpha
Helix 54
AF9
H
64 71Right-handed alpha
Helix 55
AG1
H
75 86Right-handed alpha
Helix 56
AG2
H
91 102Right-handed alpha
Helix 57
AG3
H
105 117Right-handed alpha
Helix 58
AG4
H
118 120Right-handed 310
Helix 59
AG5
H
121 126Right-handed alpha
Helix 60
AG6
H
130 142Right-handed alpha
Helix 61
AG7
H
149 159Right-handed alpha
Helix 62
AG8
H
161 175Right-handed alpha
Helix 63
AG9
I
2 13Right-handed alpha
Helix 64
AH1
I
14 25Right-handed alpha
Helix 65
AH2
I
36 47Right-handed alpha
Helix 66
AH3
I
51 62Right-handed alpha
Helix 67
AH4
I
64 71Right-handed alpha
Helix 68
AH5
I
75 86Right-handed alpha
Helix 69
AH6
I
91 102Right-handed alpha
Helix 70
AH7
I
105 117Right-handed alpha
Helix 71
AH8
I
130 141Right-handed alpha
Helix 72
AH9
I
149 159Right-handed alpha
Helix 73
AI1
I
161 175Right-handed alpha
Helix 74
AI2
J
2 13Right-handed alpha
Helix 75
AI3
J
14 25Right-handed alpha
Helix 76
AI4
J
36 47Right-handed alpha
Helix 77
AI5
J
51 62Right-handed alpha
Helix 78
AI6
J
64 71Right-handed alpha
Helix 79
AI7
J
75 86Right-handed alpha
Helix 80
AI8
J
91 104Right-handed alpha
Helix 81
AI9
J
107 117Right-handed alpha
Helix 82
AJ1
J
118 120Right-handed 310
Helix 83
AJ2
J
130 141Right-handed alpha
Helix 84
AJ3
J
149 159Right-handed alpha
Helix 85
AJ4
J
161 175Right-handed alpha
Helix 86
AJ5
K
2 13Right-handed alpha
Helix 87
AJ6
K
14 25Right-handed alpha
Helix 88
AJ7
K
36 47Right-handed alpha
Helix 89
AJ8
K
51 62Right-handed alpha
Helix 90
AJ9
K
64 71Right-handed alpha
Helix 91
AK1
K
75 86Right-handed alpha
Helix 92
AK2
K
91 104Right-handed alpha
Helix 93
AK3
K
105 116Right-handed alpha
Helix 94
AK4
K
121 126Right-handed alpha
Helix 95
AK5
K
130 141Right-handed alpha
Helix 96
AK6
K
149 159Right-handed alpha
Helix 97
AK7
K
162 175Right-handed alpha
Helix 98
AK8
G
2 12Right-handed alpha
Helix 99
AK9
G
14 25Right-handed alpha
Helix 100
AL1
G
36 47Right-handed alpha
Helix 101
AL2
G
51 63Right-handed alpha
Helix 102
AL3
G
64 71Right-handed alpha
Helix 103
AL4
G
75 85Right-handed alpha
Helix 104
AL5
G
91 102Right-handed alpha
Helix 105
AL6
G
105 116Right-handed alpha
Helix 106
AL7
G
130 141Right-handed alpha
Helix 107
AL8
G
149 158Right-handed alpha
Helix 108
AL9
G
161 175Right-handed alpha
Helix 109
AM1
F
2 13Right-handed alpha
Helix 110
AM2
F
14 26Right-handed alpha
Helix 111
AM3
F
36 47Right-handed alpha
Helix 112
AM4
F
51 62Right-handed alpha
Helix 113
AM5
F
64 71Right-handed alpha
Helix 114
AM6
F
75 86Right-handed alpha
Helix 115
AM7
F
91 104Right-handed alpha
Helix 116
AM8
F
105 121Right-handed alpha
Helix 117
AM9
F
130 141Right-handed alpha
Helix 118
AN1
F
149 159Right-handed alpha
Helix 119
AN2
F
161 175Right-handed alpha
Helix 120
AN3
N
2 13Right-handed alpha
Helix 121
AN4
N
14 25Right-handed alpha
Helix 122
AN5
N
38 48Right-handed alpha
Helix 123
AN6
N
51 63Right-handed alpha
Helix 124
AN7
N
65 71Right-handed alpha
Helix 125
AN8
N
75 86Right-handed alpha
Helix 126
AN9
N
91 103Right-handed alpha
Helix 127
AO1
N
105 116Right-handed alpha
Helix 128
AO2
N
130 141Right-handed alpha
Helix 129
AO3
N
149 159Right-handed alpha
Helix 130
AO4
N
162 175Right-handed alpha
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There are no sheets in PDB entry 8YNM
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