Analysis of interatomic Contacts of Structural Units in PDB entry:
8YNQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YNQ entry

There are 4 chains in PDB entry 8YNQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 29	SER 440
D	SER 30	SER 440
A	SER 30	SER 440
B	SER 30	SER 440

There are 64 helices in PDB entry 8YNQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	33	41	Right-handed 310
Helix 2	AA2	C	56	66	Right-handed alpha
Helix 3	AA3	C	68	72	Right-handed 310
Helix 4	AA4	C	82	88	Right-handed alpha
Helix 5	AA5	C	88	100	Right-handed alpha
Helix 6	AA6	C	113	123	Right-handed alpha
Helix 7	AA7	C	130	136	Right-handed alpha
Helix 8	AA8	C	137	142	Right-handed alpha
Helix 9	AA9	C	144	156	Right-handed alpha
Helix 10	AB1	C	167	179	Right-handed alpha
Helix 11	AB2	C	222	234	Right-handed alpha
Helix 12	AB3	C	299	317	Right-handed alpha
Helix 13	AB4	C	346	358	Right-handed alpha
Helix 14	AB5	C	360	364	Right-handed 310
Helix 15	AB6	C	377	389	Right-handed alpha
Helix 16	AB7	C	421	437	Right-handed alpha
Helix 17	AB8	D	34	41	Right-handed 310
Helix 18	AB9	D	56	65	Right-handed alpha
Helix 19	AC1	D	68	72	Right-handed 310
Helix 20	AC2	D	82	88	Right-handed alpha
Helix 21	AC3	D	88	100	Right-handed alpha
Helix 22	AC4	D	113	124	Right-handed alpha
Helix 23	AC5	D	130	136	Right-handed alpha
Helix 24	AC6	D	137	141	Right-handed 310
Helix 25	AC7	D	144	156	Right-handed alpha
Helix 26	AC8	D	167	179	Right-handed alpha
Helix 27	AC9	D	223	235	Right-handed alpha
Helix 28	AD1	D	299	317	Right-handed alpha
Helix 29	AD2	D	346	357	Right-handed alpha
Helix 30	AD3	D	360	364	Right-handed 310
Helix 31	AD4	D	377	389	Right-handed alpha
Helix 32	AD5	D	421	437	Right-handed alpha
Helix 33	AD6	A	32	41	Right-handed 310
Helix 34	AD7	A	56	66	Right-handed alpha
Helix 35	AD8	A	82	88	Right-handed alpha
Helix 36	AD9	A	88	99	Right-handed alpha
Helix 37	AE1	A	113	123	Right-handed alpha
Helix 38	AE2	A	130	135	Right-handed alpha
Helix 39	AE3	A	137	142	Right-handed alpha
Helix 40	AE4	A	144	156	Right-handed alpha
Helix 41	AE5	A	167	179	Right-handed alpha
Helix 42	AE6	A	219	221	Right-handed 310
Helix 43	AE7	A	222	234	Right-handed alpha
Helix 44	AE8	A	299	317	Right-handed alpha
Helix 45	AE9	A	346	358	Right-handed alpha
Helix 46	AF1	A	360	364	Right-handed 310
Helix 47	AF2	A	377	389	Right-handed alpha
Helix 48	AF3	A	421	436	Right-handed alpha
Helix 49	AF4	B	34	41	Right-handed 310
Helix 50	AF5	B	56	66	Right-handed alpha
Helix 51	AF6	B	68	72	Right-handed 310
Helix 52	AF7	B	82	88	Right-handed alpha
Helix 53	AF8	B	88	100	Right-handed alpha
Helix 54	AF9	B	113	122	Right-handed alpha
Helix 55	AG1	B	130	136	Right-handed alpha
Helix 56	AG2	B	137	142	Right-handed alpha
Helix 57	AG3	B	144	156	Right-handed alpha
Helix 58	AG4	B	167	179	Right-handed alpha
Helix 59	AG5	B	222	235	Right-handed alpha
Helix 60	AG6	B	299	317	Right-handed alpha
Helix 61	AG7	B	346	358	Right-handed alpha
Helix 62	AG8	B	360	365	Right-handed alpha
Helix 63	AG9	B	377	389	Right-handed alpha
Helix 64	AH1	B	421	437	Right-handed alpha

There are 18 sheets in PDB entry 8YNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	73	76	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	184	189	anti-parallel
Strand 4	C	198	202	anti-parallel
Strand 5	C	214	217	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	285	286	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	292	first strand
Strand 2	C	265	275	anti-parallel
Strand 3	C	252	260	anti-parallel
Strand 4	C	320	328	anti-parallel
Strand 5	C	334	340	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	373	first strand
Strand 2	C	413	419	anti-parallel
Strand 3	C	399	404	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	49	first strand
Strand 2	D	73	76	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	165	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	184	189	anti-parallel
Strand 4	D	198	202	anti-parallel
Strand 5	D	215	217	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	292	first strand
Strand 2	D	265	275	anti-parallel
Strand 3	D	252	260	anti-parallel
Strand 4	D	321	328	anti-parallel
Strand 5	D	334	340	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	373	first strand
Strand 2	D	413	419	anti-parallel
Strand 3	D	399	402	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	49	first strand
Strand 2	A	73	76	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	242	246	anti-parallel
Strand 3	A	184	189	anti-parallel
Strand 4	A	198	202	anti-parallel
Strand 5	A	214	217	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	284	286	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	292	first strand
Strand 2	A	265	275	anti-parallel
Strand 3	A	252	260	anti-parallel
Strand 4	A	320	328	anti-parallel
Strand 5	A	334	340	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	373	first strand
Strand 2	A	413	419	anti-parallel
Strand 3	A	399	404	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	49	first strand
Strand 2	B	73	76	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	242	246	anti-parallel
Strand 3	B	184	189	anti-parallel
Strand 4	B	198	202	anti-parallel
Strand 5	B	214	217	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	292	first strand
Strand 2	B	265	276	anti-parallel
Strand 3	B	252	260	anti-parallel
Strand 4	B	320	328	anti-parallel
Strand 5	B	334	340	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	373	first strand
Strand 2	B	412	419	anti-parallel
Strand 3	B	399	407	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YNQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YNQ