Analysis of interatomic Contacts of Structural Units in PDB entry:
8YNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YNV entry

There are 4 chains in PDB entry 8YNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 2GLN 299
B
 PRO 4GLN 299
C
 PRO 4LYS 300
D
 PRO 4GLN 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8YNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 43Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
76 91Right-handed alpha
Helix 4
AA4
A
103 115Right-handed alpha
Helix 5
AA5
A
152 158Right-handed alpha
Helix 6
AA6
A
163 173Right-handed alpha
Helix 7
AA7
A
174 186Right-handed alpha
Helix 8
AA8
A
193 205Right-handed alpha
Helix 9
AA9
A
209 219Right-handed alpha
Helix 10
AB1
A
234 239Right-handed 310
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
280 285Right-handed alpha
Helix 13
AB4
A
285 299Right-handed alpha
Helix 14
AB5
B
40 43Right-handed 310
Helix 15
AB6
B
44 52Right-handed alpha
Helix 16
AB7
B
76 92Right-handed alpha
Helix 17
AB8
B
103 115Right-handed alpha
Helix 18
AB9
B
152 158Right-handed alpha
Helix 19
AC1
B
163 172Right-handed alpha
Helix 20
AC2
B
174 186Right-handed alpha
Helix 21
AC3
B
193 205Right-handed alpha
Helix 22
AC4
B
209 219Right-handed alpha
Helix 23
AC5
B
234 239Right-handed 310
Helix 24
AC6
B
255 266Right-handed alpha
Helix 25
AC7
B
280 285Right-handed alpha
Helix 26
AC8
B
285 299Right-handed alpha
Helix 27
AC9
C
40 43Right-handed 310
Helix 28
AD1
C
44 52Right-handed alpha
Helix 29
AD2
C
76 91Right-handed alpha
Helix 30
AD3
C
103 115Right-handed alpha
Helix 31
AD4
C
152 159Right-handed alpha
Helix 32
AD5
C
162 173Right-handed alpha
Helix 33
AD6
C
174 186Right-handed alpha
Helix 34
AD7
C
193 205Right-handed alpha
Helix 35
AD8
C
209 219Right-handed alpha
Helix 36
AD9
C
234 239Right-handed 310
Helix 37
AE1
C
255 266Right-handed alpha
Helix 38
AE2
C
280 285Right-handed alpha
Helix 39
AE3
C
285 298Right-handed alpha
Helix 40
AE4
D
40 43Right-handed 310
Helix 41
AE5
D
44 52Right-handed alpha
Helix 42
AE6
D
76 91Right-handed alpha
Helix 43
AE7
D
103 115Right-handed alpha
Helix 44
AE8
D
152 158Right-handed alpha
Helix 45
AE9
D
163 173Right-handed alpha
Helix 46
AF1
D
174 186Right-handed alpha
Helix 47
AF2
D
193 205Right-handed alpha
Helix 48
AF3
D
209 219Right-handed alpha
Helix 49
AF4
D
234 239Right-handed 310
Helix 50
AF5
D
255 266Right-handed alpha
Helix 51
AF6
D
280 285Right-handed alpha
Helix 52
AF7
D
285 299Right-handed alpha
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There are 8 sheets in PDB entry 8YNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
30 34parallel
Strand 5
A
96 101parallel
Strand 6
A
119 125parallel
Strand 7
A
243 248parallel
Strand 8
A
269 274parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
144 149anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
30 34parallel
Strand 5
B
96 101parallel
Strand 6
B
119 125parallel
Strand 7
B
243 248parallel
Strand 8
B
269 274parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
144 149anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 11first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
56 60anti-parallel
Strand 4
C
30 34parallel
Strand 5
C
96 101parallel
Strand 6
C
119 125parallel
Strand 7
C
243 248parallel
Strand 8
C
269 274parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
136 138first strand
Strand 2
C
144 149anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 11first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
56 60anti-parallel
Strand 4
D
30 34parallel
Strand 5
D
96 101parallel
Strand 6
D
119 125parallel
Strand 7
D
243 248parallel
Strand 8
D
269 274parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
136 138first strand
Strand 2
D
144 149anti-parallel
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