Analysis of interatomic Contacts of Structural Units in PDB entry:
8YNX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YNX entry

There are 2 chains in PDB entry 8YNX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 57ASP 232
B
 HIS 52ASN 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8YNX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
113 134Right-handed alpha
Helix 3
AA3
A
142 157Right-handed alpha
Helix 4
AA4
A
200 218Right-handed alpha
Helix 5
AA5
A
224 231Right-handed 310
Helix 6
AA6
B
69 90Right-handed alpha
Helix 7
AA7
B
99 111Right-handed alpha
Helix 8
AA8
B
112 114Right-handed 310
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There are 2 sheets in PDB entry 8YNX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
76 79anti-parallel
Strand 3
B
61 66parallel
Strand 4
A
175 180anti-parallel
Strand 5
A
136 141anti-parallel
Strand 6
A
162 167parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
B
131 137anti-parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
119 125parallel
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