Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YO3 entry

There are 4 chains in PDB entry 8YO3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 442
C	ALA 392	GLY 664
B	MET 1	LYS 442
D	ALA 392	GLY 664

There are 63 helices in PDB entry 8YO3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	16	Right-handed alpha
Helix 2	AA2	A	17	26	Right-handed alpha
Helix 3	AA3	A	37	51	Right-handed alpha
Helix 4	AA4	A	61	72	Right-handed alpha
Helix 5	AA5	A	77	89	Right-handed alpha
Helix 6	AA6	A	123	130	Right-handed alpha
Helix 7	AA7	A	132	136	Right-handed 310
Helix 8	AA8	A	156	161	Right-handed alpha
Helix 9	AA9	A	177	190	Right-handed alpha
Helix 10	AB1	A	239	254	Right-handed alpha
Helix 11	AB2	A	283	295	Right-handed alpha
Helix 12	AB3	A	319	366	Right-handed alpha
Helix 13	AB4	A	374	384	Right-handed alpha
Helix 14	AB5	A	391	397	Right-handed alpha
Helix 15	AB6	A	399	403	Right-handed 310
Helix 16	AB7	A	404	427	Right-handed alpha
Helix 17	AB8	A	429	438	Right-handed alpha
Helix 18	AB9	C	419	427	Right-handed alpha
Helix 19	AC1	C	448	452	Right-handed 310
Helix 20	AC2	C	455	466	Right-handed alpha
Helix 21	AC3	C	509	514	Right-handed alpha
Helix 22	AC4	C	523	527	Right-handed 310
Helix 23	AC5	C	528	534	Right-handed alpha
Helix 24	AC6	C	559	564	Right-handed alpha
Helix 25	AC7	C	565	575	Right-handed alpha
Helix 26	AC8	C	578	583	Right-handed alpha
Helix 27	AC9	C	607	616	Right-handed alpha
Helix 28	AD1	C	628	632	Right-handed 310
Helix 29	AD2	C	633	643	Right-handed alpha
Helix 30	AD3	C	654	662	Right-handed alpha
Helix 31	AD4	B	8	16	Right-handed alpha
Helix 32	AD5	B	18	25	Right-handed alpha
Helix 33	AD6	B	37	51	Right-handed alpha
Helix 34	AD7	B	61	67	Right-handed alpha
Helix 35	AD8	B	67	72	Right-handed alpha
Helix 36	AD9	B	75	89	Right-handed alpha
Helix 37	AE1	B	123	130	Right-handed alpha
Helix 38	AE2	B	132	136	Right-handed 310
Helix 39	AE3	B	156	161	Right-handed alpha
Helix 40	AE4	B	177	191	Right-handed alpha
Helix 41	AE5	B	239	247	Right-handed alpha
Helix 42	AE6	B	247	254	Right-handed alpha
Helix 43	AE7	B	283	295	Right-handed alpha
Helix 44	AE8	B	319	366	Right-handed alpha
Helix 45	AE9	B	374	384	Right-handed alpha
Helix 46	AF1	B	385	390	Right-handed alpha
Helix 47	AF2	B	391	397	Right-handed alpha
Helix 48	AF3	B	399	403	Right-handed 310
Helix 49	AF4	B	404	427	Right-handed alpha
Helix 50	AF5	B	429	437	Right-handed alpha
Helix 51	AF6	B	438	440	Right-handed 310
Helix 52	AF7	D	420	427	Right-handed alpha
Helix 53	AF8	D	455	466	Right-handed alpha
Helix 54	AF9	D	509	514	Right-handed alpha
Helix 55	AG1	D	523	527	Right-handed 310
Helix 56	AG2	D	528	534	Right-handed alpha
Helix 57	AG3	D	559	564	Right-handed alpha
Helix 58	AG4	D	565	575	Right-handed alpha
Helix 59	AG5	D	578	584	Right-handed alpha
Helix 60	AG6	D	607	616	Right-handed alpha
Helix 61	AG7	D	628	632	Right-handed 310
Helix 62	AG8	D	633	643	Right-handed alpha
Helix 63	AG9	D	654	662	Right-handed alpha

There are 20 sheets in PDB entry 8YO3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	C	645	648	parallel
Strand 3	C	586	589	anti-parallel
Strand 4	C	551	555	parallel
Strand 5	C	410	414	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	98	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	169	173	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	211	first strand
Strand 2	A	214	218	anti-parallel
Strand 3	A	298	301	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	228	231	anti-parallel
Strand 3	A	270	274	anti-parallel
Strand 4	A	257	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	308	first strand
Strand 2	A	314	317	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	476	first strand
Strand 2	C	542	545	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	495	first strand
Strand 2	C	482	487	anti-parallel
Strand 3	C	520	521	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	508	first strand
Strand 2	C	499	502	anti-parallel
Strand 3	C	538	539	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	604	605	first strand
Strand 2	C	594	595	anti-parallel
Strand 3	C	624	625	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	D	645	646	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	170	173	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	298	301	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	228	231	anti-parallel
Strand 3	B	270	274	anti-parallel
Strand 4	B	257	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	308	first strand
Strand 2	B	314	317	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	414	first strand
Strand 2	D	552	555	parallel
Strand 3	D	586	588	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	495	first strand
Strand 2	D	482	487	anti-parallel
Strand 3	D	520	521	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	505	508	first strand
Strand 2	D	499	502	anti-parallel
Strand 3	D	538	539	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	594	595	first strand
Strand 2	D	604	605	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YO3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO3