Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YO4 entry

There are 6 chains in PDB entry 8YO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 442
C	LYS 393	GLN 676
B	MET 1	LYS 442
D	LYS 393	GLN 676
E	T 2	A 25
F	A 2	T 25

There are 64 helices in PDB entry 8YO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	13	Right-handed alpha
Helix 2	AA2	A	19	24	Right-handed alpha
Helix 3	AA3	A	37	54	Right-handed alpha
Helix 4	AA4	A	61	65	Right-handed alpha
Helix 5	AA5	A	76	86	Right-handed alpha
Helix 6	AA6	A	123	129	Right-handed alpha
Helix 7	AA7	A	132	136	Right-handed 310
Helix 8	AA8	A	156	161	Right-handed alpha
Helix 9	AA9	A	177	191	Right-handed alpha
Helix 10	AB1	A	240	245	Right-handed alpha
Helix 11	AB2	A	247	254	Right-handed alpha
Helix 12	AB3	A	283	295	Right-handed alpha
Helix 13	AB4	A	323	365	Right-handed alpha
Helix 14	AB5	A	374	381	Right-handed alpha
Helix 15	AB6	A	388	390	Right-handed 310
Helix 16	AB7	A	391	397	Right-handed alpha
Helix 17	AB8	A	404	427	Right-handed alpha
Helix 18	AB9	A	429	438	Right-handed alpha
Helix 19	AC1	C	417	421	Right-handed 310
Helix 20	AC2	C	422	427	Right-handed alpha
Helix 21	AC3	C	451	454	Right-handed 310
Helix 22	AC4	C	455	466	Right-handed alpha
Helix 23	AC5	C	509	513	Right-handed alpha
Helix 24	AC6	C	528	534	Right-handed alpha
Helix 25	AC7	C	559	565	Right-handed alpha
Helix 26	AC8	C	566	575	Right-handed alpha
Helix 27	AC9	C	579	583	Right-handed 310
Helix 28	AD1	C	607	612	Right-handed alpha
Helix 29	AD2	C	613	618	Right-handed 310
Helix 30	AD3	C	635	643	Right-handed alpha
Helix 31	AD4	C	654	663	Right-handed alpha
Helix 32	AD5	C	667	672	Right-handed alpha
Helix 33	AD6	B	8	27	Right-handed alpha
Helix 34	AD7	B	39	51	Right-handed alpha
Helix 35	AD8	B	61	65	Right-handed alpha
Helix 36	AD9	B	68	72	Right-handed 310
Helix 37	AE1	B	76	86	Right-handed alpha
Helix 38	AE2	B	123	130	Right-handed alpha
Helix 39	AE3	B	156	161	Right-handed alpha
Helix 40	AE4	B	177	191	Right-handed alpha
Helix 41	AE5	B	240	245	Right-handed alpha
Helix 42	AE6	B	248	252	Right-handed 310
Helix 43	AE7	B	283	295	Right-handed alpha
Helix 44	AE8	B	319	364	Right-handed alpha
Helix 45	AE9	B	374	385	Right-handed alpha
Helix 46	AF1	B	388	392	Right-handed 310
Helix 47	AF2	B	393	398	Right-handed alpha
Helix 48	AF3	B	399	403	Right-handed 310
Helix 49	AF4	B	407	426	Right-handed alpha
Helix 50	AF5	B	429	439	Right-handed alpha
Helix 51	AF6	D	416	420	Right-handed 310
Helix 52	AF7	D	448	453	Right-handed alpha
Helix 53	AF8	D	455	466	Right-handed alpha
Helix 54	AF9	D	486	490	Right-handed 310
Helix 55	AG1	D	509	513	Right-handed alpha
Helix 56	AG2	D	529	534	Right-handed alpha
Helix 57	AG3	D	559	565	Right-handed alpha
Helix 58	AG4	D	566	575	Right-handed alpha
Helix 59	AG5	D	577	583	Right-handed alpha
Helix 60	AG6	D	607	613	Right-handed alpha
Helix 61	AG7	D	628	632	Right-handed 310
Helix 62	AG8	D	633	643	Right-handed alpha
Helix 63	AG9	D	654	664	Right-handed alpha
Helix 64	AH1	D	666	675	Right-handed alpha

There are 19 sheets in PDB entry 8YO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	C	646	650	parallel
Strand 3	C	587	589	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	98	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	151	152	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	169	173	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	211	first strand
Strand 2	A	214	218	anti-parallel
Strand 3	A	298	301	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	223	first strand
Strand 2	A	228	231	anti-parallel
Strand 3	A	271	274	anti-parallel
Strand 4	A	257	260	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	314	316	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	C	493	494	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	501	first strand
Strand 2	C	506	508	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	605	first strand
Strand 2	C	594	596	anti-parallel
Strand 3	C	624	625	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	D	648	650	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	170	173	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	230	first strand
Strand 2	B	271	274	anti-parallel
Strand 3	B	257	259	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	308	first strand
Strand 2	B	314	317	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	436	first strand
Strand 2	D	410	414	parallel
Strand 3	D	551	554	parallel
Strand 4	D	586	588	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	508	first strand
Strand 2	D	498	500	anti-parallel
Strand 3	D	539	540	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	594	598	first strand
Strand 2	D	601	605	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO4