Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YO5 entry

There are 4 chains in PDB entry 8YO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 442
B	MET 1	LYS 442
C	LYS 393	MET 592
D	LYS 393	MET 592

There are 53 helices in PDB entry 8YO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	12	23	Right-handed alpha
Helix 3	AA3	A	37	52	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	68	70	Right-handed 310
Helix 6	AA6	A	76	84	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed alpha
Helix 8	AA8	A	132	136	Right-handed 310
Helix 9	AA9	A	177	190	Right-handed alpha
Helix 10	AB1	A	239	254	Right-handed alpha
Helix 11	AB2	A	285	295	Right-handed alpha
Helix 12	AB3	A	319	366	Right-handed alpha
Helix 13	AB4	A	373	375	Right-handed 310
Helix 14	AB5	A	376	383	Right-handed alpha
Helix 15	AB6	A	387	390	Right-handed 310
Helix 16	AB7	A	391	396	Right-handed alpha
Helix 17	AB8	A	399	403	Right-handed 310
Helix 18	AB9	A	404	428	Right-handed alpha
Helix 19	AC1	A	429	441	Right-handed alpha
Helix 20	AC2	B	8	11	Right-handed 310
Helix 21	AC3	B	12	23	Right-handed alpha
Helix 22	AC4	B	37	52	Right-handed alpha
Helix 23	AC5	B	61	67	Right-handed alpha
Helix 24	AC6	B	76	84	Right-handed alpha
Helix 25	AC7	B	123	128	Right-handed alpha
Helix 26	AC8	B	132	136	Right-handed 310
Helix 27	AC9	B	177	190	Right-handed alpha
Helix 28	AD1	B	239	247	Right-handed alpha
Helix 29	AD2	B	247	254	Right-handed alpha
Helix 30	AD3	B	285	295	Right-handed alpha
Helix 31	AD4	B	319	366	Right-handed alpha
Helix 32	AD5	B	376	383	Right-handed alpha
Helix 33	AD6	B	387	390	Right-handed 310
Helix 34	AD7	B	391	397	Right-handed alpha
Helix 35	AD8	B	399	404	Right-handed 310
Helix 36	AD9	B	405	428	Right-handed alpha
Helix 37	AE1	B	429	441	Right-handed alpha
Helix 38	AE2	C	416	427	Right-handed alpha
Helix 39	AE3	C	448	455	Right-handed alpha
Helix 40	AE4	C	455	466	Right-handed alpha
Helix 41	AE5	C	494	504	Right-handed alpha
Helix 42	AE6	C	506	513	Right-handed alpha
Helix 43	AE7	C	536	544	Right-handed alpha
Helix 44	AE8	C	557	561	Right-handed 310
Helix 45	AE9	C	562	572	Right-handed alpha
Helix 46	AF1	C	585	590	Right-handed alpha
Helix 47	AF2	D	416	427	Right-handed alpha
Helix 48	AF3	D	448	455	Right-handed alpha
Helix 49	AF4	D	455	466	Right-handed alpha
Helix 50	AF5	D	494	504	Right-handed alpha
Helix 51	AF6	D	506	513	Right-handed alpha
Helix 52	AF7	D	536	544	Right-handed alpha
Helix 53	AF8	D	562	572	Right-handed alpha

There are 14 sheets in PDB entry 8YO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	119	121	anti-parallel
Strand 3	A	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	170	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	215	218	anti-parallel
Strand 3	A	298	300	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	225	first strand
Strand 2	A	228	233	anti-parallel
Strand 3	A	271	274	anti-parallel
Strand 4	A	257	260	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	119	121	anti-parallel
Strand 3	B	99	101	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	165	first strand
Strand 2	B	170	173	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	216	218	anti-parallel
Strand 3	B	298	299	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	228	230	anti-parallel
Strand 3	B	271	274	anti-parallel
Strand 4	B	257	260	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	414	first strand
Strand 2	C	480	484	parallel
Strand 3	C	515	517	parallel
Strand 4	C	576	577	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	526	first strand
Strand 2	C	551	554	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	410	415	parallel
Strand 3	D	480	483	parallel
Strand 4	D	515	518	parallel
Strand 5	D	575	577	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	532	first strand
Strand 2	D	523	527	anti-parallel
Strand 3	D	551	554	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO5