Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YO7 entry

There are 8 chains in PDB entry 8YO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 442
B	MET 1	LYS 442
C	LYS 393	GLN 605
D	LYS 393	GLN 605
E	A 10	T 21
F	A 10	A 20
X	A 2	T 9
Y	T 3	T 9

There are 57 helices in PDB entry 8YO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	37	52	Right-handed alpha
Helix 3	AA3	A	61	65	Right-handed alpha
Helix 4	AA4	A	67	71	Right-handed 310
Helix 5	AA5	A	78	87	Right-handed alpha
Helix 6	AA6	A	114	117	Right-handed 310
Helix 7	AA7	A	123	130	Right-handed alpha
Helix 8	AA8	A	132	136	Right-handed 310
Helix 9	AA9	A	155	160	Right-handed alpha
Helix 10	AB1	A	178	190	Right-handed alpha
Helix 11	AB2	A	239	247	Right-handed alpha
Helix 12	AB3	A	247	255	Right-handed alpha
Helix 13	AB4	A	283	295	Right-handed alpha
Helix 14	AB5	A	319	365	Right-handed alpha
Helix 15	AB6	A	374	384	Right-handed alpha
Helix 16	AB7	A	392	397	Right-handed alpha
Helix 17	AB8	A	404	428	Right-handed alpha
Helix 18	AB9	A	429	440	Right-handed alpha
Helix 19	AC1	B	8	15	Right-handed alpha
Helix 20	AC2	B	15	26	Right-handed alpha
Helix 21	AC3	B	37	52	Right-handed alpha
Helix 22	AC4	B	61	65	Right-handed alpha
Helix 23	AC5	B	68	72	Right-handed 310
Helix 24	AC6	B	77	88	Right-handed alpha
Helix 25	AC7	B	123	130	Right-handed alpha
Helix 26	AC8	B	156	161	Right-handed alpha
Helix 27	AC9	B	177	191	Right-handed alpha
Helix 28	AD1	B	239	247	Right-handed alpha
Helix 29	AD2	B	247	254	Right-handed alpha
Helix 30	AD3	B	283	295	Right-handed alpha
Helix 31	AD4	B	319	366	Right-handed alpha
Helix 32	AD5	B	374	385	Right-handed alpha
Helix 33	AD6	B	385	390	Right-handed alpha
Helix 34	AD7	B	399	403	Right-handed 310
Helix 35	AD8	B	404	425	Right-handed alpha
Helix 36	AD9	B	429	440	Right-handed alpha
Helix 37	AE1	C	416	427	Right-handed alpha
Helix 38	AE2	C	448	453	Right-handed alpha
Helix 39	AE3	C	455	465	Right-handed alpha
Helix 40	AE4	C	488	494	Right-handed alpha
Helix 41	AE5	C	494	504	Right-handed alpha
Helix 42	AE6	C	507	512	Right-handed alpha
Helix 43	AE7	C	536	544	Right-handed alpha
Helix 44	AE8	C	557	561	Right-handed 310
Helix 45	AE9	C	562	572	Right-handed alpha
Helix 46	AF1	C	595	605	Right-handed alpha
Helix 47	AF2	D	417	427	Right-handed alpha
Helix 48	AF3	D	448	453	Right-handed alpha
Helix 49	AF4	D	455	465	Right-handed alpha
Helix 50	AF5	D	488	494	Right-handed alpha
Helix 51	AF6	D	494	504	Right-handed alpha
Helix 52	AF7	D	505	510	Right-handed 310
Helix 53	AF8	D	536	543	Right-handed alpha
Helix 54	AF9	D	557	561	Right-handed 310
Helix 55	AG1	D	562	572	Right-handed alpha
Helix 56	AG2	D	587	593	Right-handed alpha
Helix 57	AG3	D	595	603	Right-handed alpha

There are 13 sheets in PDB entry 8YO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	D	574	579	parallel
Strand 3	D	515	518	anti-parallel
Strand 4	D	480	483	parallel
Strand 5	D	410	412	parallel
Strand 6	D	432	434	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	98	101	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	170	173	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	A	216	218	anti-parallel
Strand 3	A	298	300	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	270	274	anti-parallel
Strand 3	A	257	261	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	314	316	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	C	574	579	parallel
Strand 3	C	515	518	anti-parallel
Strand 4	C	480	484	parallel
Strand 5	C	410	414	parallel
Strand 6	C	435	436	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	98	101	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	170	172	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	298	302	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	228	233	anti-parallel
Strand 3	B	270	274	anti-parallel
Strand 4	B	257	261	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	314	316	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	530	534	first strand
Strand 2	D	523	527	anti-parallel
Strand 3	D	552	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO7