Analysis of interatomic Contacts of Structural Units in PDB entry:
8YO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YO8 entry

There is 1 chain in PDB entry 8YO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7PRO 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8YO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 34Right-handed alpha
Helix 2
AA2
A
49 52Right-handed 310
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
61 64Right-handed 310
Helix 5
AA5
A
69 74Right-handed alpha
Helix 6
AA6
A
124 142Right-handed alpha
Helix 7
AA7
A
151 165Right-handed alpha
Helix 8
AA8
A
185 200Right-handed alpha
Helix 9
AA9
A
211 215Right-handed 310
Helix 10
AB1
A
256 260Right-handed 310
Helix 11
AB2
A
284 287Right-handed 310
Helix 12
AB3
A
294 314Right-handed alpha
Helix 13
AB4
A
347 355Right-handed alpha
Helix 14
AB5
A
360 368Right-handed alpha
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There are 7 sheets in PDB entry 8YO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
37 41parallel
Strand 3
A
14 17parallel
Strand 4
A
104 107parallel
Strand 5
A
280 282parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
66 68anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
91 94anti-parallel
Strand 3
A
99 101anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
246 247anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
169 173parallel
Strand 3
A
144 148parallel
Strand 4
A
238 241parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
233 236anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
344 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il