Analysis of interatomic Contacts of Structural Units in PDB entry:
8YOR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YOR entry

There are 6 chains in PDB entry 8YOR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	CYS 217
B	GLN 1	SER 224
E	ARG 11	LEU 52
C	ASP 1	CYS 217
F	ALA 12	GLN 51
D	GLN 1	CYS 225

There are 20 helices in PDB entry 8YOR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	124	129	Right-handed alpha
Helix 3	AA3	A	186	190	Right-handed alpha
Helix 4	AA4	B	28	30	Right-handed 310
Helix 5	AA5	B	62	65	Right-handed 310
Helix 6	AA6	B	87	91	Right-handed 310
Helix 7	AA7	B	196	198	Right-handed 310
Helix 8	AA8	B	210	213	Right-handed 310
Helix 9	AA9	E	12	31	Right-handed alpha
Helix 10	AB1	E	34	50	Right-handed alpha
Helix 11	AB2	C	82	86	Right-handed 310
Helix 12	AB3	C	124	129	Right-handed alpha
Helix 13	AB4	C	186	190	Right-handed alpha
Helix 14	AB5	F	13	31	Right-handed alpha
Helix 15	AB6	F	34	51	Right-handed alpha
Helix 16	AB7	D	28	30	Right-handed 310
Helix 17	AB8	D	62	65	Right-handed 310
Helix 18	AB9	D	87	91	Right-handed 310
Helix 19	AC1	D	196	198	Right-handed 310
Helix 20	AC2	D	210	213	Right-handed 310

There are 20 sheets in PDB entry 8YOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	73	78	anti-parallel
Strand 4	A	65	70	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	105	110	parallel
Strand 3	A	87	93	anti-parallel
Strand 4	A	36	41	anti-parallel
Strand 5	A	48	52	anti-parallel
Strand 6	A	56	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	121	first strand
Strand 2	A	132	142	anti-parallel
Strand 3	A	176	185	anti-parallel
Strand 4	A	162	166	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	147	153	anti-parallel
Strand 3	A	194	201	anti-parallel
Strand 4	A	208	213	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	120	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	116	120	parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	185	194	anti-parallel
Strand 4	B	172	174	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	144	154	anti-parallel
Strand 3	B	185	194	anti-parallel
Strand 4	B	178	179	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	163	first strand
Strand 2	B	204	209	anti-parallel
Strand 3	B	214	219	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	65	70	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	105	110	parallel
Strand 3	C	87	93	anti-parallel
Strand 4	C	36	41	anti-parallel
Strand 5	C	48	52	anti-parallel
Strand 6	C	56	57	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	121	first strand
Strand 2	C	132	142	anti-parallel
Strand 3	C	176	185	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	148	153	anti-parallel
Strand 3	C	194	200	anti-parallel
Strand 4	C	208	213	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	32	39	anti-parallel
Strand 5	D	45	52	anti-parallel
Strand 6	D	57	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	116	120	parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	111	112	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	144	154	anti-parallel
Strand 3	D	185	194	anti-parallel
Strand 4	D	172	174	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	144	154	anti-parallel
Strand 3	D	185	194	anti-parallel
Strand 4	D	178	179	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	163	first strand
Strand 2	D	203	209	anti-parallel
Strand 3	D	214	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YOR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YOR