Analysis of interatomic Contacts of Structural Units in PDB entry:
8YOT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YOT entry

There are 4 chains in PDB entry 8YOT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 25	SER 139
B	PRO 29	GLY 420
C	GLN 25	SER 139
D	PRO 29	GLY 420

There are 8 helices in PDB entry 8YOT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	86	Right-handed 310
Helix 2	AA2	A	108	112	Right-handed 310
Helix 3	AA3	B	287	291	Right-handed 310
Helix 4	AA4	B	387	391	Right-handed 310
Helix 5	AA5	C	83	86	Right-handed 310
Helix 6	AA6	C	108	112	Right-handed 310
Helix 7	AA7	D	287	291	Right-handed 310
Helix 8	AA8	D	387	391	Right-handed 310

There are 28 sheets in PDB entry 8YOT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	39	46	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	89	94	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	113	119	anti-parallel
Strand 5	A	129	130	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	56	60	anti-parallel
Strand 4	A	113	119	anti-parallel
Strand 5	A	134	136	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	45	50	anti-parallel
Strand 3	B	80	85	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	113	118	parallel
Strand 3	B	94	102	anti-parallel
Strand 4	B	57	62	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	113	118	parallel
Strand 3	B	94	102	anti-parallel
Strand 4	B	105	106	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	128	first strand
Strand 2	B	140	146	anti-parallel
Strand 3	B	177	183	anti-parallel
Strand 4	B	170	171	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	214	219	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	152	157	anti-parallel
Strand 5	B	165	168	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	135	first strand
Strand 2	B	214	219	parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	240	247	anti-parallel
Strand 3	B	276	285	anti-parallel
Strand 4	B	270	273	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	313	321	parallel
Strand 3	B	292	299	anti-parallel
Strand 4	B	253	258	anti-parallel
Strand 5	B	265	268	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	313	321	parallel
Strand 3	B	406	408	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	342	347	anti-parallel
Strand 3	B	377	382	anti-parallel
Strand 4	B	371	372	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	414	419	parallel
Strand 3	B	392	399	anti-parallel
Strand 4	B	353	358	anti-parallel
Strand 5	B	366	369	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	39	46	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	65	73	anti-parallel
Strand 3	C	56	62	anti-parallel
Strand 4	C	113	119	anti-parallel
Strand 5	C	129	130	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	65	73	anti-parallel
Strand 3	C	56	62	anti-parallel
Strand 4	C	113	119	anti-parallel
Strand 5	C	134	136	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	45	50	anti-parallel
Strand 3	D	80	85	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	113	118	parallel
Strand 3	D	94	102	anti-parallel
Strand 4	D	57	62	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	113	118	parallel
Strand 3	D	94	102	anti-parallel
Strand 4	D	105	106	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	128	first strand
Strand 2	D	140	146	anti-parallel
Strand 3	D	177	183	anti-parallel
Strand 4	D	170	171	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	214	219	parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	152	157	anti-parallel
Strand 5	D	165	168	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	135	first strand
Strand 2	D	214	219	parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	203	207	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	229	first strand
Strand 2	D	240	247	anti-parallel
Strand 3	D	276	285	anti-parallel
Strand 4	D	270	273	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	313	321	parallel
Strand 3	D	292	299	anti-parallel
Strand 4	D	253	258	anti-parallel
Strand 5	D	265	268	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	313	321	parallel
Strand 3	D	406	408	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	329	first strand
Strand 2	D	342	347	anti-parallel
Strand 3	D	377	382	anti-parallel
Strand 4	D	371	372	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	414	419	parallel
Strand 3	D	392	399	anti-parallel
Strand 4	D	353	358	anti-parallel
Strand 5	D	366	369	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YOT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YOT