Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YP3 entry

There are 4 chains in PDB entry 8YP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 10	SER 480
B	HIS 6	MET 481
C	HIS 4	MET 481
D	HIS 7	ALA 485

There are105 helices in PDB entry 8YP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	21	27	Right-handed 310
Helix 3	AA3	A	28	32	Right-handed 310
Helix 4	AA4	A	33	46	Right-handed alpha
Helix 5	AA5	A	48	60	Right-handed alpha
Helix 6	AA6	A	61	70	Right-handed alpha
Helix 7	AA7	A	77	81	Right-handed 310
Helix 8	AA8	A	85	87	Right-handed 310
Helix 9	AA9	A	88	105	Right-handed alpha
Helix 10	AB1	A	126	130	Right-handed 310
Helix 11	AB2	A	139	160	Right-handed alpha
Helix 12	AB3	A	172	186	Right-handed alpha
Helix 13	AB4	A	187	191	Right-handed 310
Helix 14	AB5	A	192	194	Right-handed 310
Helix 15	AB6	A	227	229	Right-handed 310
Helix 16	AB7	A	230	238	Right-handed alpha
Helix 17	AB8	A	239	248	Right-handed alpha
Helix 18	AB9	A	266	276	Right-handed alpha
Helix 19	AC1	A	308	312	Right-handed 310
Helix 20	AC2	A	313	319	Right-handed alpha
Helix 21	AC3	A	340	347	Right-handed alpha
Helix 22	AC4	A	348	353	Right-handed 310
Helix 23	AC5	A	385	393	Right-handed 310
Helix 24	AC6	A	402	407	Right-handed alpha
Helix 25	AC7	A	413	417	Right-handed 310
Helix 26	AC8	A	420	439	Right-handed alpha
Helix 27	AC9	A	462	467	Right-handed alpha
Helix 28	AD1	B	9	20	Right-handed alpha
Helix 29	AD2	B	21	27	Right-handed 310
Helix 30	AD3	B	28	32	Right-handed 310
Helix 31	AD4	B	33	46	Right-handed alpha
Helix 32	AD5	B	49	54	Right-handed alpha
Helix 33	AD6	B	77	79	Right-handed 310
Helix 34	AD7	B	85	87	Right-handed 310
Helix 35	AD8	B	88	105	Right-handed alpha
Helix 36	AD9	B	126	130	Right-handed 310
Helix 37	AE1	B	139	160	Right-handed alpha
Helix 38	AE2	B	175	186	Right-handed alpha
Helix 39	AE3	B	187	191	Right-handed 310
Helix 40	AE4	B	192	194	Right-handed 310
Helix 41	AE5	B	227	229	Right-handed 310
Helix 42	AE6	B	230	238	Right-handed alpha
Helix 43	AE7	B	239	248	Right-handed alpha
Helix 44	AE8	B	266	276	Right-handed alpha
Helix 45	AE9	B	308	312	Right-handed 310
Helix 46	AF1	B	313	318	Right-handed alpha
Helix 47	AF2	B	340	347	Right-handed alpha
Helix 48	AF3	B	385	393	Right-handed 310
Helix 49	AF4	B	402	407	Right-handed alpha
Helix 50	AF5	B	413	417	Right-handed 310
Helix 51	AF6	B	420	439	Right-handed alpha
Helix 52	AF7	B	462	467	Right-handed alpha
Helix 53	AF8	C	9	20	Right-handed alpha
Helix 54	AF9	C	21	27	Right-handed 310
Helix 55	AG1	C	28	32	Right-handed 310
Helix 56	AG2	C	33	46	Right-handed alpha
Helix 57	AG3	C	48	60	Right-handed alpha
Helix 58	AG4	C	77	81	Right-handed 310
Helix 59	AG5	C	85	87	Right-handed 310
Helix 60	AG6	C	88	105	Right-handed alpha
Helix 61	AG7	C	126	130	Right-handed 310
Helix 62	AG8	C	139	160	Right-handed alpha
Helix 63	AG9	C	175	186	Right-handed alpha
Helix 64	AH1	C	187	191	Right-handed 310
Helix 65	AH2	C	192	194	Right-handed 310
Helix 66	AH3	C	227	229	Right-handed 310
Helix 67	AH4	C	230	238	Right-handed alpha
Helix 68	AH5	C	239	248	Right-handed alpha
Helix 69	AH6	C	266	276	Right-handed alpha
Helix 70	AH7	C	308	312	Right-handed 310
Helix 71	AH8	C	313	319	Right-handed alpha
Helix 72	AH9	C	340	347	Right-handed alpha
Helix 73	AI1	C	348	353	Right-handed 310
Helix 74	AI2	C	385	393	Right-handed 310
Helix 75	AI3	C	402	407	Right-handed alpha
Helix 76	AI4	C	413	417	Right-handed 310
Helix 77	AI5	C	420	439	Right-handed alpha
Helix 78	AI6	C	462	467	Right-handed alpha
Helix 79	AI7	D	9	20	Right-handed alpha
Helix 80	AI8	D	21	27	Right-handed 310
Helix 81	AI9	D	28	32	Right-handed 310
Helix 82	AJ1	D	33	46	Right-handed alpha
Helix 83	AJ2	D	48	60	Right-handed alpha
Helix 84	AJ3	D	77	81	Right-handed 310
Helix 85	AJ4	D	85	87	Right-handed 310
Helix 86	AJ5	D	88	105	Right-handed alpha
Helix 87	AJ6	D	126	130	Right-handed 310
Helix 88	AJ7	D	139	160	Right-handed alpha
Helix 89	AJ8	D	172	186	Right-handed alpha
Helix 90	AJ9	D	187	191	Right-handed 310
Helix 91	AK1	D	192	194	Right-handed 310
Helix 92	AK2	D	227	229	Right-handed 310
Helix 93	AK3	D	230	238	Right-handed alpha
Helix 94	AK4	D	239	248	Right-handed alpha
Helix 95	AK5	D	266	276	Right-handed alpha
Helix 96	AK6	D	308	312	Right-handed 310
Helix 97	AK7	D	313	319	Right-handed alpha
Helix 98	AK8	D	340	347	Right-handed alpha
Helix 99	AK9	D	348	353	Right-handed 310
Helix 100	AL1	D	385	393	Right-handed 310
Helix 101	AL2	D	402	407	Right-handed alpha
Helix 102	AL3	D	413	417	Right-handed 310
Helix 103	AL4	D	420	439	Right-handed alpha
Helix 104	AL5	D	462	467	Right-handed alpha
Helix 105	AL6	D	480	485	Right-handed alpha

There are 32 sheets in PDB entry 8YP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	296	300	anti-parallel
Strand 3	A	303	307	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	396	400	parallel
Strand 3	A	280	286	parallel
Strand 4	A	330	339	anti-parallel
Strand 5	A	251	256	anti-parallel
Strand 6	A	108	113	parallel
Strand 7	A	166	171	parallel
Strand 8	A	196	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	379	383	anti-parallel
Strand 3	A	356	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	A	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	476	478	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	303	307	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	396	400	parallel
Strand 3	B	280	286	parallel
Strand 4	B	330	339	anti-parallel
Strand 5	B	251	256	anti-parallel
Strand 6	B	108	113	parallel
Strand 7	B	166	171	parallel
Strand 8	B	196	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	356	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	443	first strand
Strand 2	B	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	476	478	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	296	300	anti-parallel
Strand 3	C	303	307	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	396	400	parallel
Strand 3	C	280	286	parallel
Strand 4	C	330	339	anti-parallel
Strand 5	C	251	256	anti-parallel
Strand 6	C	108	113	parallel
Strand 7	C	166	171	parallel
Strand 8	C	196	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	379	383	anti-parallel
Strand 3	C	356	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	C	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	443	first strand
Strand 2	C	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	449	451	first strand
Strand 2	C	476	478	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	396	400	parallel
Strand 3	D	280	286	parallel
Strand 4	D	330	339	anti-parallel
Strand 5	D	251	256	anti-parallel
Strand 6	D	108	113	parallel
Strand 7	D	166	171	parallel
Strand 8	D	196	200	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	379	383	anti-parallel
Strand 3	D	356	360	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	217	first strand
Strand 2	D	220	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	298	first strand
Strand 2	D	305	307	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	364	365	first strand
Strand 2	D	371	372	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	443	first strand
Strand 2	D	470	471	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	449	451	first strand
Strand 2	D	476	478	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP3