Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YP4 entry

There are 2 chains in PDB entry 8YP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 34PRO 384
B
 ASP 43GLN 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8YP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 59Right-handed alpha
Helix 2
AA2
A
64 66Right-handed 310
Helix 3
AA3
A
107 116Right-handed alpha
Helix 4
AA4
A
117 119Right-handed 310
Helix 5
AA5
A
151 159Right-handed alpha
Helix 6
AA6
A
162 182Right-handed alpha
Helix 7
AA7
A
192 194Right-handed 310
Helix 8
AA8
A
232 236Right-handed 310
Helix 9
AA9
A
241 259Right-handed alpha
Helix 10
AB1
A
270 275Right-handed alpha
Helix 11
AB2
A
310 320Right-handed alpha
Helix 12
AB3
A
331 342Right-handed alpha
Helix 13
AB4
A
351 357Right-handed alpha
Helix 14
AB5
A
358 367Right-handed alpha
Helix 15
AB6
A
370 380Right-handed alpha
Helix 16
AB7
B
44 59Right-handed alpha
Helix 17
AB8
B
64 66Right-handed 310
Helix 18
AB9
B
107 116Right-handed alpha
Helix 19
AC1
B
117 120Right-handed 310
Helix 20
AC2
B
151 159Right-handed alpha
Helix 21
AC3
B
162 182Right-handed alpha
Helix 22
AC4
B
192 194Right-handed 310
Helix 23
AC5
B
241 259Right-handed alpha
Helix 24
AC6
B
267 276Right-handed alpha
Helix 25
AC7
B
309 320Right-handed alpha
Helix 26
AC8
B
331 342Right-handed alpha
Helix 27
AC9
B
351 357Right-handed alpha
Helix 28
AD1
B
358 367Right-handed alpha
Helix 29
AD2
B
370 380Right-handed alpha
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There are 4 sheets in PDB entry 8YP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 74first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
138 144anti-parallel
Strand 5
A
129 135anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
196 198anti-parallel
Strand 3
A
204 206anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 73first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
138 143anti-parallel
Strand 5
B
129 135anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il