Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YP6 entry

There are 20 chains in PDB entry 8YP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	U 9	A 1518
c	MET 1	GLY 210
d	ALA 2	LYS 201
e	ARG 17	ALA 214
f	MET 1	HIS 96
g	MET 1	TRP 156
h	MET 3	TRP 132
i	PRO 25	ARG 150
j	LYS 5	GLN 101
k	LYS 22	VAL 138
l	PRO 2	LYS 123
n	ALA 2	TRP 61
o	ALA 2	ARG 88
p	ALA 2	GLU 114
q	GLY 6	ALA 97
r	LYS 16	PHE 79
t	ASN 3	LEU 86
s	LYS 6	LYS 85
A	MET 1	LEU 285
m	ALA 2	ALA 118

There are 79 helices in PDB entry 8YP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	c	6	11	Right-handed alpha
Helix 2	AA2	c	27	42	Right-handed alpha
Helix 3	AA3	c	43	50	Right-handed alpha
Helix 4	AA4	c	82	94	Right-handed alpha
Helix 5	AA5	c	111	125	Right-handed alpha
Helix 6	AA6	c	128	142	Right-handed alpha
Helix 7	AA7	c	157	160	Right-handed 310
Helix 8	AA8	d	8	16	Right-handed alpha
Helix 9	AA9	d	23	29	Right-handed alpha
Helix 10	AB1	d	44	61	Right-handed alpha
Helix 11	AB2	d	63	77	Right-handed alpha
Helix 12	AB3	d	80	90	Right-handed alpha
Helix 13	AB4	d	92	100	Right-handed alpha
Helix 14	AB5	d	105	116	Right-handed alpha
Helix 15	AB6	d	141	146	Right-handed alpha
Helix 16	AB7	d	147	156	Right-handed alpha
Helix 17	AB8	d	182	187	Right-handed alpha
Helix 18	AB9	d	192	201	Right-handed alpha
Helix 19	AC1	e	80	95	Right-handed alpha
Helix 20	AC2	e	133	142	Right-handed alpha
Helix 21	AC3	e	158	171	Right-handed alpha
Helix 22	AC4	e	174	183	Right-handed alpha
Helix 23	AC5	e	191	214	Right-handed alpha
Helix 24	AC6	f	15	20	Right-handed alpha
Helix 25	AC7	f	20	35	Right-handed alpha
Helix 26	AC8	f	68	79	Right-handed alpha
Helix 27	AC9	g	20	31	Right-handed alpha
Helix 28	AD1	g	36	55	Right-handed alpha
Helix 29	AD2	g	57	70	Right-handed alpha
Helix 30	AD3	g	92	111	Right-handed alpha
Helix 31	AD4	g	115	129	Right-handed alpha
Helix 32	AD5	g	132	148	Right-handed alpha
Helix 33	AD6	g	149	155	Right-handed 310
Helix 34	AD7	h	5	20	Right-handed alpha
Helix 35	AD8	h	30	44	Right-handed alpha
Helix 36	AD9	h	96	101	Right-handed 310
Helix 37	AE1	h	114	122	Right-handed alpha
Helix 38	AE2	i	54	59	Right-handed alpha
Helix 39	AE3	i	63	75	Right-handed alpha
Helix 40	AE4	i	91	111	Right-handed alpha
Helix 41	AE5	i	113	122	Right-handed alpha
Helix 42	AE6	j	14	33	Right-handed alpha
Helix 43	AE7	j	80	90	Right-handed alpha
Helix 44	AE8	k	55	60	Right-handed alpha
Helix 45	AE9	k	64	67	Right-handed 310
Helix 46	AF1	k	68	86	Right-handed alpha
Helix 47	AF2	k	101	111	Right-handed alpha
Helix 48	AF3	l	3	10	Right-handed alpha
Helix 49	AF4	l	115	119	Right-handed 310
Helix 50	AF5	n	3	12	Right-handed alpha
Helix 51	AF6	n	40	50	Right-handed alpha
Helix 52	AF7	o	6	16	Right-handed alpha
Helix 53	AF8	o	24	46	Right-handed alpha
Helix 54	AF9	o	52	74	Right-handed alpha
Helix 55	AG1	o	74	86	Right-handed alpha
Helix 56	AG2	p	52	63	Right-handed alpha
Helix 57	AG3	p	67	78	Right-handed alpha
Helix 58	AG4	p	79	84	Right-handed alpha
Helix 59	AG5	p	101	114	Right-handed alpha
Helix 60	AG6	r	34	40	Right-handed alpha
Helix 61	AG7	r	57	75	Right-handed alpha
Helix 62	AG8	t	7	41	Right-handed alpha
Helix 63	AG9	t	43	64	Right-handed alpha
Helix 64	AH1	t	68	86	Right-handed alpha
Helix 65	AH2	s	12	25	Right-handed alpha
Helix 66	AH3	s	41	45	Right-handed 310
Helix 67	AH4	s	63	67	Right-handed 310
Helix 68	AH5	s	71	75	Right-handed 310
Helix 69	AH6	A	25	29	Right-handed 310
Helix 70	AH7	A	43	68	Right-handed alpha
Helix 71	AH8	A	73	88	Right-handed alpha
Helix 72	AH9	A	153	173	Right-handed alpha
Helix 73	AI1	A	180	194	Right-handed alpha
Helix 74	AI2	m	14	22	Right-handed alpha
Helix 75	AI3	m	26	38	Right-handed alpha
Helix 76	AI4	m	49	64	Right-handed alpha
Helix 77	AI5	m	66	84	Right-handed alpha
Helix 78	AI6	m	86	94	Right-handed alpha
Helix 79	AI7	m	107	112	Right-handed alpha

There are 22 sheets in PDB entry 8YP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	51	56	first strand
Strand 2	c	65	69	anti-parallel
Strand 3	c	101	104	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	164	170	first strand
Strand 2	c	148	155	anti-parallel
Strand 3	c	195	203	anti-parallel
Strand 4	c	182	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	118	120	first strand
Strand 2	d	138	140	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	37	43	first strand
Strand 2	e	53	65	anti-parallel
Strand 3	e	46	50	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	37	43	first strand
Strand 2	e	53	65	anti-parallel
Strand 3	e	71	78	anti-parallel
Strand 4	e	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	110	114	first strand
Strand 2	e	117	123	anti-parallel
Strand 3	e	148	153	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	38	47	first strand
Strand 2	f	57	67	anti-parallel
Strand 3	f	2	10	anti-parallel
Strand 4	f	85	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	73	75	first strand
Strand 2	g	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	24	28	first strand
Strand 2	h	58	63	anti-parallel
Strand 3	h	48	53	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	103	106	first strand
Strand 2	h	127	131	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	26	31	first strand
Strand 2	i	36	43	anti-parallel
Strand 3	i	81	88	anti-parallel
Strand 4	i	48	49	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	40	42	first strand
Strand 2	j	70	76	anti-parallel
Strand 3	j	6	12	anti-parallel
Strand 4	j	96	101	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	49	51	first strand
Strand 2	j	63	67	anti-parallel
Strand 3	n	56	57	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	50	54	first strand
Strand 2	k	39	44	anti-parallel
Strand 3	k	27	34	anti-parallel
Strand 4	k	90	95	parallel
Strand 5	k	119	121	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	30	35	first strand
Strand 2	l	52	57	anti-parallel
Strand 3	l	62	66	anti-parallel
Strand 4	l	95	97	parallel
Strand 5	l	79	84	anti-parallel
Strand 6	l	30	35	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	49	51	first strand
Strand 2	p	35	40	anti-parallel
Strand 3	p	17	24	anti-parallel
Strand 4	p	3	10	anti-parallel
Strand 5	p	65	66	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	58	61	first strand
Strand 2	q	36	39	anti-parallel
Strand 3	q	22	27	anti-parallel
Strand 4	q	72	83	anti-parallel
Strand 5	q	86	91	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	49	51	first strand
Strand 2	s	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	108	first strand
Strand 2	A	126	136	anti-parallel
Strand 3	A	139	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	240	242	anti-parallel
Strand 3	A	265	267	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	216	217	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	270	274	anti-parallel
Strand 3	A	279	281	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YP6